View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3010R-Insertion-4 (Length: 673)
Name: NF3010R-Insertion-4
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010R-Insertion-4 |
 | |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 609; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 9 - 673
Target Start/End: Complemental strand, 26192334 - 26191670
Alignment:
| Q |
9 |
cgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgtt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26192334 |
cgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacactgtt |
26192235 |
T |
|
| Q |
109 |
ttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaaga |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26192234 |
ttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatccccttccatatccatatgccatttactattgccattacattgccacaaaga |
26192135 |
T |
|
| Q |
209 |
ttaaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatca |
308 |
Q |
| |
|
|||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26192134 |
ctaaagtgttcaaggtctcacttgttagtgatgagaatggagataaaatggaagctcttggagtttgccattttgatacatctgaatggaaccctaatca |
26192035 |
T |
|
| Q |
309 |
tattatattcaaacaacttgggattaaggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcc |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
26192034 |
tattatattcaaacaacttgggattaaggctgggaagaattctccagtgtgtcactttttccctgtgaaccatcttatgtggattccaatctagccatcc |
26191935 |
T |
|
| Q |
409 |
caaagccactatgtgaaatgagtttgtctatctagatttgtataataaaggctttatcaatcttaccaatgatgctggtgagtattgagtgatgaccaat |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
26191934 |
caaagccactatgtgaaatgagtttgtctatctagatttgtataataaaggttttatcaatcttaccaatgatgctggtgagtgttgagtgatgaccaat |
26191835 |
T |
|
| Q |
509 |
ttcctatttgtatgtattgttattgttacttgttttatgtataaattaagctcacggggactgcttgttgcaacctttaattagtaatattaattactca |
608 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26191834 |
ttcctatttgtatgtcttgttattgttacttgttttatgtaaatattaagctcacggggactgcttgttgcaacctttaattagtaatattaattactca |
26191735 |
T |
|
| Q |
609 |
aaaatatttactgtttaacttattttgtgtcattatttgagtaacgcaccactctgaagatattg |
673 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26191734 |
aaaatatttactgtttaacttattttgtgtcattatttgagtaacgcaccactctgaagatattg |
26191670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 9 - 511
Target Start/End: Complemental strand, 26180055 - 26179555
Alignment:
| Q |
9 |
cgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgtt |
108 |
Q |
| |
|
|||||||||| |||| || |||||||| | | |||| ||||||||||||||| | ||| |||||||| | | || |||| |||| ||||||||| || |
|
|
| T |
26180055 |
cgaatttgttaacacgatctttggttcagatgccaaaattagtattctaaccaccaacaaaccctcaccgacagctgtccctttacagaagtacaccatt |
26179956 |
T |
|
| Q |
109 |
ttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaaga |
208 |
Q |
| |
|
|| |||||||| ||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||| || |
|
|
| T |
26179955 |
ttggaagtatcccatgatattgatgctccaaaatgggtagcttgtcatcccctctcatatccatatgccatttacttttgtcattacatagctacaggga |
26179856 |
T |
|
| Q |
209 |
ttaaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatca |
308 |
Q |
| |
|
|| ||||||||| ||||| ||||| ||||| |||||||||||||||| |||||| ||||| |||||||||| || |||||||| |||||||| |||| |
|
|
| T |
26179855 |
ctagagtgttcaaggtctcgcttgtcggtgatgagaatggagataaaatggaagctgttggaatttgccatttggacacatctgattggaacccagatca |
26179756 |
T |
|
| Q |
309 |
tattatattcaaacaacttgggattaaggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcc |
408 |
Q |
| |
|
||| ||||| | || ||| | |||||||| |||| ||| ||||||||||||||||| || ||||||||||||||| ||||| | |||||| | || | | |
|
|
| T |
26179755 |
tataatatttaggcagcttagcattaaggccgggaagaactctccagtgtgtcacttcttacctgtgaaccatcttctgtgggttccaatgcaacc-ttc |
26179657 |
T |
|
| Q |
409 |
caaagccactatgtgaaatgagtttgtctatctagatttgtataataaaggctttatcaatcttaccaatgatgctggtgagtattgagtgatgaccaat |
508 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||||| |||||||||||||| ||||||||||| || | ||||| | |||||| ||||||||||||||| |
|
|
| T |
26179656 |
aaaagccaccatgtgaagtgagttggtctatctagacttgtataataaagg-tttatcaatctcactagtgatggttgtgagtgatgagtgatgaccaat |
26179558 |
T |
|
| Q |
509 |
ttc |
511 |
Q |
| |
|
||| |
|
|
| T |
26179557 |
ttc |
26179555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 9 - 529
Target Start/End: Complemental strand, 26162258 - 26161740
Alignment:
| Q |
9 |
cgaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgtt |
108 |
Q |
| |
|
||||||||||||||| || ||||||||| ||| ||| ||| |||||| || || | ||| |||||| | | | | | |||| |||| || |||||| || |
|
|
| T |
26162258 |
cgaatttgttgacacgatcattggttcatacgcgaaacataatattctcactaccaccaaaccctcatcgacagccatccctttacagaattacaccatt |
26162159 |
T |
|
| Q |
109 |
ttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaaga |
208 |
Q |
| |
|
|| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||| || ||| || |
|
|
| T |
26162158 |
ttggaagtatcacatgatattgatgctcccaaatgggtagcttgtcatcccctctcatatccatatgccatttacttttgtcattacatagctacaggga |
26162059 |
T |
|
| Q |
209 |
ttaaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatca |
308 |
Q |
| |
|
|| ||||||||| |||||||||||| ||||| ||||||||||||||| |||| | ||||| |||| ||||| || |||||||| |||||||| |||| |
|
|
| T |
26162058 |
ctagagtgttcaaggtctcacttgttggtgatgcgaatggagataaaatggaagttgttggaatttgtcatttggacacatctgattggaacccagatca |
26161959 |
T |
|
| Q |
309 |
tattatattcaaacaacttgggattaaggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtggatcccaatgtagccatcc |
408 |
Q |
| |
|
|||| |||| | || ||| || ||| ||||||| ||| |||||| |||||||||| || ||||||||||||||||||||| | |||||| |||| | | |
|
|
| T |
26161958 |
tattgtatttaggcagcttagggttaccgctgggaagaactctccaatgtgtcacttcttacctgtgaaccatcttatgtgggttccaatgcagcc-ttc |
26161860 |
T |
|
| Q |
409 |
caaagccactatgtgaaatgagtttgtctatctagatttgtataataaaggctttatcaatcttaccaatgatgctggtgagtattgagtgatgaccaat |
508 |
Q |
| |
|
|||||||| ||||||| |||||| ||||||||| | |||||||||||||| ||||||||||| || | |||| || |||| | ||||||||||||||| |
|
|
| T |
26161859 |
aaaagccaccatgtgaagtgagttggtctatctaaacttgtataataaagg-tttatcaatctcactagtgatactagtgattgatgagtgatgaccaat |
26161761 |
T |
|
| Q |
509 |
ttcctatttgtatgtattgtt |
529 |
Q |
| |
|
||| | ||||||||| ||||| |
|
|
| T |
26161760 |
ttcatgtttgtatgtcttgtt |
26161740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 10 - 158
Target Start/End: Complemental strand, 26175361 - 26175213
Alignment:
| Q |
10 |
gaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgttt |
109 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||| ||||||||||||||||||| ||| |
|
|
| T |
26175361 |
gaatttgttgacacaattattagtttaaacgtcaaatatagtattctgaccaccagcaacccctcaaccagaactatccctctacaaaagtacaccattt |
26175262 |
T |
|
| Q |
110 |
tagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcc |
158 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26175261 |
tagaagtatcacatgatattgatgttccctaatgggtagcttgtcatcc |
26175213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 87 - 319
Target Start/End: Complemental strand, 25929197 - 25928965
Alignment:
| Q |
87 |
ccctctacaaaagtacaccgttttagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactat |
186 |
Q |
| |
|
|||||| ||||| |||||| ||||| ||||||||| ||| ||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
25929197 |
ccctctccaaaaatacaccattttaaaagtatcacgtgacattagtgttcccaaatgggtatcttgccatcccctcccatatccatatgccatttactat |
25929098 |
T |
|
| Q |
187 |
tgccattacattgccacaaagattaaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgata |
286 |
Q |
| |
|
|| |||||||| || ||| | || |||||||| |||||| | ||| ||||| |||||||||||||||||||||| | ||| | |||||||| |||| |
|
|
| T |
25929097 |
tgtcattacatagctacaggaactagggtgttcaaggtctcattggttggtgatgtgaatggagataaaatagaagctgtaggaatgtgccatttggata |
25928998 |
T |
|
| Q |
287 |
catctgaatggaaccctaatcatattatattca |
319 |
Q |
| |
|
||||||| ||||| || ||||||| ||||||| |
|
|
| T |
25928997 |
catctgattggaatccagatcatataatattca |
25928965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 11 - 390
Target Start/End: Original strand, 25648650 - 25649029
Alignment:
| Q |
11 |
aatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgtttt |
110 |
Q |
| |
|
|||||||||||||||| ||||||||| | | ||||||| |||||| || || | |||||| |||||| | | | |||||| | || |||||| | || |
|
|
| T |
25648650 |
aatttgttgacacaataattggttcagaagccaaatatgatattctcacaaccaacaacccatcaccctcagccatccctctctagaaatacaccatctt |
25648749 |
T |
|
| Q |
111 |
agaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaagatt |
210 |
Q |
| |
|
||||||||| | |||||| ||| | ||||||||| |||| |||||| | |||||||||||||| ||||| ||| ||| |||| || ||| || | |
|
|
| T |
25648750 |
ggaagtatcagacgatattaatgcatctaaatgggtatcttgccatcccatgccatatccatatgctgtttacggttgtcatcacatagctacagggagt |
25648849 |
T |
|
| Q |
211 |
aaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcata |
310 |
Q |
| |
|
||||||||||| || || | ||| ||||| |||||||||||||||| |||||||||||| | || || || ||||||||||| ||||||||| ||||| |
|
|
| T |
25648850 |
aaagtgttcaaggtatctttggttggtgatgagaatggagataaaatggaagctcttggaatgtgtcacttggatacatctgactggaaccctgatcatg |
25648949 |
T |
|
| Q |
311 |
ttatattcaaacaacttgggattaaggctgggaggaattctccagtgtgtcactttttccctgtgaaccatcttatgtgg |
390 |
Q |
| |
|
||||||| ||| | || ||| |||||| ||||||| ||| ||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
25648950 |
agttattcaagacactaagaatcaagcctgggaagaattcttcagcgtgtcacttctttcctgtaaaccatcttttgtgg |
25649029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 573 - 601
Target Start/End: Complemental strand, 25928609 - 25928581
Alignment:
| Q |
573 |
ttgttgcaacctttaattagtaatattaa |
601 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25928609 |
ttgttgcaacctttaattagtaatattaa |
25928581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 32189499 - 32189799
Alignment:
| Q |
10 |
gaatttgttgacacaattattggttcaaacgtcaaatatagtattctaaccacgagcaacccctcacccagaactacccctctacaaaagtacaccgttt |
109 |
Q |
| |
|
||||| |||| |||||| ||||||||| | | ||||||| |||||| || || |||||||| ||||||| ||| |||||||| || || |||||| ||| |
|
|
| T |
32189499 |
gaattcgttggcacaataattggttcagaagccaaatatgatattctcacaaccagcaacccatcacccacaaccacccctctccagaaatacaccattt |
32189598 |
T |
|
| Q |
110 |
tagaagtatcacatgatattgatgttcccaaatgggtagcttgtcatcccctcccatatccatatgccatttactattgccattacattgccacaaagat |
209 |
Q |
| |
|
| |||||||||| ||| ||| ||| ||| |||||||| ||||| |||||| ||||||||||||||||||||||| ||| ||| |||| || ||| || |
|
|
| T |
32189599 |
tggaagtatcacctgacattaatgctccaaaatgggttgcttgccatcccatcccatatccatatgccatttacggttgtcatcacatagctacagggag |
32189698 |
T |
|
| Q |
210 |
taaagtgttcaaagtctcacttgttagtgatcagaatggagataaaatagaagctcttggagtttgccattttgatacatctgaatggaaccctaatcat |
309 |
Q |
| |
|
|||||||||||| || || | ||| || || |||||||||||||||| |||||||||||| | || ||||| |||||||||| |||||||| |||||| |
|
|
| T |
32189699 |
taaagtgttcaaggtatctttggttggtaatgagaatggagataaaatggaagctcttggaatgtgtcatttggatacatctggttggaacccaaatcat |
32189798 |
T |
|
| Q |
310 |
a |
310 |
Q |
| |
|
| |
|
|
| T |
32189799 |
a |
32189799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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