View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3010R-Insertion-5 (Length: 553)

Name: NF3010R-Insertion-5
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3010R-Insertion-5
NF3010R-Insertion-5
[»] chr5 (3 HSPs)
chr5 (233-473)||(866944-867187)
chr5 (65-143)||(867275-867353)
chr5 (12-45)||(867365-867398)


Alignment Details
Target: chr5 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 233 - 473
Target Start/End: Complemental strand, 867187 - 866944
Alignment:
Q  233 ctcactcacaaagttgaaatgcaatgtggtgacaaagaaaaggatgggaggctcnnnnnnnnnnnnnnnnnnnntgggtgtgtgtggctgcgttagaaag 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||||||||||||||||||||||||||    
T  867187 ctcactcacaaagttgaaatgcaatgtggtgacaaagaaaaggatgggaggctcagaaagaaagaaaaaa----tgggtgtgtgtggctgcgttagaaag 867092  T
Q  333 aagaaacgcctcgccatacaacacaaca----------caacaaccgttcatcactgcctccnnnnnnnnnnnnnnnnnnnnntgaaatgttcaaacaaa 422  Q
    ||||||||||||||||||||||||||||          ||||||||||||||||||||||||                      ||||||||||||||||    
T  867091 aagaaacgcctcgccatacaacacaacacaacacaacacaacaaccgttcatcactgcctccagaagaagaagaagaagaa---gaaatgttcaaacaaa 866995  T
Q  423 acaaccatgcaaatgcaaataatcttttctacttcaatactttacctcaaa 473  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  866994 acaaccatgcaaatgcaaataatcttttctacttcaatactttacctcaaa 866944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 867353 - 867275
Alignment:
Q  65 acagaagcatggctgcgggagtcgcctcgccatgagactactctgttctgttttgatcgatcatcacagcctcgtcctc 143  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  867353 acagaagcatggctgcgggagtcgcctcgccatgagactactctgttctgttttgatcgatcatcacagcctcgtcctc 867275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 867398 - 867365
Alignment:
Q  12 agggggtgtagatagaagaaaaggagggaggctc 45  Q
    |||||||||||| |||||||||||||||||||||    
T  867398 agggggtgtagaaagaagaaaaggagggaggctc 867365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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