View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010R-Insertion-7 (Length: 438)
Name: NF3010R-Insertion-7
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010R-Insertion-7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 438
Target Start/End: Original strand, 41717456 - 41717882
Alignment:
| Q |
9 |
atatcgaatattaaagcagctacaaaactaatcaaatgtttagatggtcatcagagaaggctttctcgtgtctcaatgtcaaatcaacacgaaaatacaa |
108 |
Q |
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| T |
41717456 |
atatcgaatattaaagcagctacacaactaatcaaatgtttagatggtcatcagagaaggctttctcatgtctcaatgtcaaatcaacacgaaaatacaa |
41717555 |
T |
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| Q |
109 |
aagcaacaaactgtagagttgtttgaccttgtggtactgtcgtgatttattgagtctcccaaacccataataaaacaactttagctagtatgctcagtca |
208 |
Q |
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| T |
41717556 |
aagcaacaaactgtagagttgtttgaccttgtggtactgtcgtgatttattgagtctcccaaacccataataaaacaactttagctagtatgctcagtca |
41717655 |
T |
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| Q |
209 |
actaaaaacatggtaaccttaggtttgaaactcttgattaattttgaccagaatgtgtaactaatcaagaaaaaggtacagcatgagtaagaagcaggac |
308 |
Q |
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| T |
41717656 |
actaaaaacatggtaaccttaggtttgaaactcttgattaattttgaccagaatgtgtaactaatcaagaaaaaggtacagcatgagtaagaagcaggac |
41717755 |
T |
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| Q |
309 |
cctgattaacagatccatacagttgcttaatatttaaatagaagtctataacatgaactttaccagtagggttcgtgaggattgtgatgcttgggtgcag |
408 |
Q |
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| T |
41717756 |
c---attaacagatccatacagttgcttaatatttaaatagaagtctgtaacatgaactttaccagtaaggttcgtgagtattgtgatgcttgggtgcag |
41717852 |
T |
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| Q |
409 |
gggggagatagacactgtggtcaacaatga |
438 |
Q |
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| T |
41717853 |
ggggaagatagacactgtggtcaacaatga |
41717882 |
T |
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