View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010R-Insertion-8 (Length: 434)
Name: NF3010R-Insertion-8
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010R-Insertion-8 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 40070966 - 40071203
Alignment:
| Q |
9 |
ttaggaagattaacgaaatcgaaatggcttctctacttgcgaaaagagttgcagtaagcgttcacagagtcctcaattcttcgaagccacaatcaaccac |
108 |
Q |
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| T |
40070966 |
ttaggaagattaacgaaatcgaaatggcttctctacttgtgaaaagagttgcagtaagcgttcacagagtcctcaattcttcgcagccacaatcaaccac |
40071065 |
T |
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| Q |
109 |
actcctcaggcctgtttttctatatcataagatttcccctttcacttctcactctgattctgataacaactcgcttcacatcgatttatccaatcaagaa |
208 |
Q |
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| T |
40071066 |
actcctcaggcctgtttttggatatcataagatttcccctttcacttctcactctgattctgataacaactcgcttcacatcgatttatccaatcaagaa |
40071165 |
T |
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| Q |
209 |
tccaaaagaacattgttcaacaggttggttccttttct |
246 |
Q |
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| T |
40071166 |
tccaaaagaaccttgttcaacaggttggttccttttct |
40071203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 269 - 434
Target Start/End: Original strand, 40071245 - 40071416
Alignment:
| Q |
269 |
ttttgttatgatgataaataaataaacctctcttgtgttaatact------actactgataggttattgtatagaagcaagcaacgagggtttctcgaac |
362 |
Q |
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| T |
40071245 |
ttttgttatgatgataaataaataaacctctcttgtgttactactactactactactgataggttattgtatagaagcaagcaacgagggtttctcgaac |
40071344 |
T |
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| Q |
363 |
tcgatttggttcttggaaaatgggtacagaacaatatccactccctcgatgaaaatcatattcgatctctca |
434 |
Q |
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| T |
40071345 |
tcgatctggttcttggaaaatgggtacagaacaatatccactccctcgatgaaaatcatattcgatctctca |
40071416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 321 - 402
Target Start/End: Original strand, 44968912 - 44968993
Alignment:
| Q |
321 |
ataggttattgtatagaagcaagcaacgagggtttctcgaactcgatttggttcttggaaaatgggtacagaacaatatcca |
402 |
Q |
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| T |
44968912 |
ataggttattatatagaagcaaacaacgcgggtttctggaactggacttggttcttggcaaatgggtagaggataatatcca |
44968993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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