View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3010R-Insertion-9 (Length: 340)

Name: NF3010R-Insertion-9
Description: NF3010R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3010R-Insertion-9
NF3010R-Insertion-9
[»] chr2 (11 HSPs)
chr2 (46-340)||(3737021-3737316)
chr2 (46-169)||(14166957-14167081)
chr2 (110-169)||(8184117-8184177)
chr2 (109-169)||(14385144-14385205)
chr2 (61-170)||(16813640-16813749)
chr2 (61-170)||(16852919-16853028)
chr2 (46-128)||(37183251-37183333)
chr2 (176-205)||(5093546-5093575)
chr2 (109-169)||(11522136-11522197)
chr2 (118-170)||(36641930-36641983)
chr2 (109-169)||(42946680-42946741)
[»] chr4 (13 HSPs)
chr4 (188-340)||(22225607-22225758)
chr4 (46-169)||(516054-516180)
chr4 (76-169)||(24682952-24683046)
chr4 (109-169)||(52430531-52430592)
chr4 (170-217)||(3695199-3695246)
chr4 (46-167)||(29114201-29114324)
chr4 (118-170)||(368130-368183)
chr4 (109-165)||(24662707-24662764)
chr4 (109-169)||(37662707-37662768)
chr4 (73-169)||(47063710-47063807)
chr4 (118-169)||(28880064-28880116)
chr4 (129-169)||(43167048-43167088)
chr4 (118-169)||(48620362-48620414)
[»] chr3 (22 HSPs)
chr3 (191-340)||(33277804-33277951)
chr3 (202-331)||(52006155-52006285)
chr3 (201-331)||(39192552-39192681)
chr3 (61-170)||(49183701-49183811)
chr3 (73-169)||(1132891-1132988)
chr3 (99-169)||(7302138-7302209)
chr3 (165-217)||(11654084-11654136)
chr3 (110-169)||(46891451-46891511)
chr3 (47-169)||(52620791-52620915)
chr3 (99-169)||(4247171-4247242)
chr3 (99-165)||(11500155-11500222)
chr3 (99-169)||(32858884-32858955)
chr3 (46-167)||(38639579-38639702)
chr3 (126-169)||(39966834-39966877)
chr3 (118-169)||(50201639-50201690)
chr3 (46-167)||(53664567-53664690)
chr3 (109-169)||(15499255-15499316)
chr3 (188-217)||(18715702-18715731)
chr3 (109-169)||(27922025-27922086)
chr3 (109-169)||(29623300-29623361)
chr3 (109-169)||(35283151-35283212)
chr3 (73-148)||(37457031-37457107)
[»] chr1 (18 HSPs)
chr1 (169-340)||(38452370-38452543)
chr1 (169-340)||(42760499-42760672)
chr1 (73-170)||(28848754-28848852)
chr1 (71-170)||(50226056-50226156)
chr1 (98-151)||(33643686-33643740)
chr1 (72-169)||(40243388-40243488)
chr1 (109-169)||(41432718-41432779)
chr1 (46-169)||(50476528-50476653)
chr1 (126-170)||(32287662-32287706)
chr1 (79-170)||(33324657-33324749)
chr1 (114-169)||(9315011-9315066)
chr1 (126-169)||(9861273-9861316)
chr1 (73-151)||(15426249-15426325)
chr1 (100-169)||(39886880-39886950)
chr1 (169-217)||(12377212-12377261)
chr1 (109-169)||(20712172-20712233)
chr1 (126-167)||(34749973-34750014)
chr1 (73-169)||(52073414-52073511)
[»] chr8 (14 HSPs)
chr8 (170-340)||(15451082-15451255)
chr8 (73-169)||(16424165-16424263)
chr8 (109-169)||(27085412-27085473)
chr8 (47-127)||(3393974-3394054)
chr8 (166-208)||(13904001-13904043)
chr8 (74-170)||(41866082-41866179)
chr8 (169-220)||(5704312-5704364)
chr8 (99-169)||(1839776-1839847)
chr8 (99-169)||(10878738-10878809)
chr8 (46-167)||(26772610-26772733)
chr8 (126-169)||(28517216-28517259)
chr8 (80-169)||(32188-32278)
chr8 (109-169)||(41455323-41455384)
chr8 (129-169)||(32158850-32158890)
[»] chr5 (12 HSPs)
chr5 (46-169)||(19389784-19389908)
chr5 (46-169)||(13293940-13294064)
chr5 (47-170)||(10437977-10438102)
chr5 (109-169)||(29799701-29799762)
chr5 (126-169)||(12063942-12063985)
chr5 (100-169)||(17668090-17668160)
chr5 (160-217)||(8316396-8316453)
chr5 (118-169)||(1935063-1935115)
chr5 (126-170)||(2679841-2679885)
chr5 (118-169)||(5088826-5088878)
chr5 (97-169)||(6632701-6632773)
chr5 (73-168)||(41923186-41923282)
[»] chr6 (7 HSPs)
chr6 (46-151)||(13380530-13380638)
chr6 (73-170)||(20820495-20820593)
chr6 (46-167)||(32719344-32719467)
chr6 (169-226)||(1603996-1604054)
chr6 (109-169)||(20381822-20381883)
chr6 (73-169)||(34557128-34557225)
chr6 (54-169)||(26713862-26713978)
[»] scaffold0991 (1 HSPs)
scaffold0991 (46-153)||(3239-3348)
[»] scaffold0007 (1 HSPs)
scaffold0007 (47-150)||(68925-69028)
[»] chr7 (13 HSPs)
chr7 (47-151)||(39856349-39856454)
chr7 (73-169)||(43348195-43348292)
chr7 (80-170)||(38505299-38505390)
chr7 (109-169)||(21687497-21687558)
chr7 (106-169)||(7347843-7347907)
chr7 (99-169)||(1277992-1278063)
chr7 (100-170)||(33872075-33872146)
chr7 (46-167)||(45940368-45940491)
chr7 (109-170)||(13044211-13044273)
chr7 (100-169)||(14676285-14676355)
chr7 (128-169)||(4787959-4788000)
chr7 (126-170)||(35264847-35264891)
chr7 (118-169)||(43741768-43741820)
[»] scaffold0119 (1 HSPs)
scaffold0119 (100-170)||(37176-37247)
[»] scaffold0263 (1 HSPs)
scaffold0263 (109-170)||(12214-12276)
[»] scaffold0002 (1 HSPs)
scaffold0002 (79-168)||(90842-90932)


Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-126; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 46 - 340
Target Start/End: Complemental strand, 3737316 - 3737021
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtta 144  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  3737316 cataatacaaaatcatcctcatttgaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaaatttaatatatgtagtta 3737217  T
Q  145 taatattttttaaactaaaaatatagggtgttgttaaccggtgccccggggcactagttaaggagcaataaataaatggattccctcaattaaagttaaa 244  Q
    |||||||||| ||| ||||||||||||||| || ||||||||| | ||||| || |||||||||||||||||||||| ||||||||||||||||||||||    
T  3737216 taatatttttaaaattaaaaatatagggtgctgctaaccggtgtctcggggtaccagttaaggagcaataaataaatagattccctcaattaaagttaaa 3737117  T
Q  245 aataagtcagttaatgagaaaaattagaaacagttgtatttaatacttgtaaatttattttcctttacacgtttatacaacacactcgcctccttt 340  Q
    ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3737116 aataagtcaattaacgagaaaaattaaaaacagttatatttaatacttgtaaatttattttcctttacacgtttatacaacacactctcctccttt 3737021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 14166957 - 14167081
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagtta 144  Q
    ||||||| ||||||||| ||||||||  |||| |||||||||||||||| | |||||| ||| |||||||||| || ||| |||||||| ||||| ||||    
T  14166957 cataatataaaatcatcatcatttaagaaactaaaaaattgtattagaataaagttttggagggtttacataattttttcaaatttaatctatgttgtta 14167056  T
Q  145 taatattttttaaactaaaaatata 169  Q
    ||||||| ||  || ||||||||||    
T  14167057 taatattcttagaattaaaaatata 14167081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 8184177 - 8184117
Alignment:
Q  110 tttacataaattcttca-atttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||| ||||||||| ||||||| |||||| ||||||||||||||||| ||||||||||    
T  8184177 tttacatgaattcttcagatttaatctatgtacttataatattttttaaattaaaaatata 8184117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 14385144 - 14385205
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||| || ||||||| |||||| |||||||||||||||||||| ||| ||||||||||    
T  14385144 gtttacatgaaatcttcaaatttaatctatgtagttataatatttttaaaattaaaaatata 14385205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 16813640 - 16813749
Alignment:
Q  61 tcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattc-ttcaatttaatatatgtagttataatattttttaaac 159  Q
    |||| |||| || |||| |||||||||||| ||  |||||||| ||| ||||| |||||||| || |||||||| ||||| ||||  |||||||| |||     
T  16813640 tccttatttgaaaaactaaaaaattgtattggaggagagttttggagggtttatataaattctttaaatttaatctatgttgtta-catatttttaaaat 16813738  T
Q  160 taaaaatatag 170  Q
    |||||||||||    
T  16813739 taaaaatatag 16813749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 16852919 - 16853028
Alignment:
Q  61 tcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattc-ttcaatttaatatatgtagttataatattttttaaac 159  Q
    |||| |||| || |||| |||||||||||| ||  |||||||| ||| ||||| |||||||| || |||||||| ||||| ||||  |||||||| |||     
T  16852919 tccttatttgaaaaactaaaaaattgtattggaggagagttttggagggtttatataaattctttaaatttaatctatgttgtta-catatttttaaaat 16853017  T
Q  160 taaaaatatag 170  Q
    |||||||||||    
T  16853018 taaaaatatag 16853028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 128
Target Start/End: Complemental strand, 37183333 - 37183251
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaat 128  Q
    |||||||||||||  | ||||||| ||| |||||||||||||||| || || | |||| ||| ||||| || |||||||||||    
T  37183333 cataatacaaaatttttctcattttaaggactcaaaaattgtattggagaaaatttttcgagggtttatatgaattcttcaat 37183251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 5093546 - 5093575
Alignment:
Q  176 tgttaaccggtgccccggggcactagttaa 205  Q
    ||||||||||||||||||||||||||||||    
T  5093546 tgttaaccggtgccccggggcactagttaa 5093575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 11522197 - 11522136
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || |||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  11522197 gtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 11522136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 36641983 - 36641930
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||||| |||||||| ||| |||||||||||||| ||| |||||||||||    
T  36641983 aattcttcaaatttaatatgtgttgttataatatttttaaaattaaaaatatag 36641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 42946741 - 42946680
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| ||||||||||||| |||||||||||| |||||| |||| || ||| ||||||||||    
T  42946741 gtttatataaattcttcaaatttaatatatgttgttatactattcttaaaattaaaaatata 42946680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 188 - 340
Target Start/End: Original strand, 22225607 - 22225758
Alignment:
Q  188 ccccggggcactagttaaggagcaataaataaatggattccctcaattaaagttaaaaataagtcagttaatgagaaaaattagaaacagttgtatttaa 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  22225607 ccccggggcactagttaaggagcaataaataaatggattccctcaactaaagttaaaaataaatcaattaatgagaataattagaaacagttgtatttaa 22225706  T
Q  288 tacttgtaaatttattttcctttacacgtttatacaacacactcgcctccttt 340  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  22225707 tacttgt-aatttattttcctttacacggttatacaacacactcgcctccttt 22225758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 516054 - 516180
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaa-ctcaaaaattgtattagaaaagagttttagagtgtttacataa-attcttcaa-tttaatatatgtagt 142  Q
    |||||||||||||  |||||||| | |||| |||||||||||||| |||  |||||||| ||  |||||||| | ||| ||||| ||| |||||||||||    
T  516054 cataatacaaaattctcctcattcagagaaactcaaaaattgtataagatgagagttttggatggtttacatgatattattcaaatttcatatatgtagt 516153  T
Q  143 tataatattttttaaactaaaaatata 169  Q
    | |||||||||| ||| ||||||||||    
T  516154 tgtaatatttttaaaattaaaaatata 516180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 24683046 - 24682952
Alignment:
Q  76 ctcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||||||| ||  || ||||||||| |||| ||| |||||||||| |||||| || ||||||||||||||||| |||  |||||||||    
T  24683046 ctcaaaaattgtatttgaggagggttttagagggtttgcatgaattcttcaaatttaatctaggtagttataatatttttaaaataaaaaatata 24682952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 52430592 - 52430531
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||| ||| ||||||||||    
T  52430592 gtttatatgaattcttcaaatttaatatatgttgttataatatttttaaaattaaaaatata 52430531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 170 - 217
Target Start/End: Complemental strand, 3695246 - 3695199
Alignment:
Q  170 gggtgttgttaaccggtgccccggggcactagttaaggagcaataaat 217  Q
    |||||||| |||| ||||||||| |||||| |||||||||||||||||    
T  3695246 gggtgttgctaactggtgccccgcggcactggttaaggagcaataaat 3695199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 29114324 - 29114201
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||| | |||||||||  || |||| |||||||||||| ||  || ||||| ||| ||| | |  |||||||||| |||||| ||||| |||    
T  29114324 cataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggagggttaataagaattcttcaaatttaatttatgttgtt 29114225  T
Q  144 ataatattttttaaactaaaaata 167  Q
    ||||||||||| ||| ||||||||    
T  29114224 ataatatttttaaaattaaaaata 29114201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 368130 - 368183
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||||| |||||| ||||| |||||||||||||| ||| |||||||||||    
T  368130 aattcttcaaatttaatttatgttgttataatatttttaaaattaaaaatatag 368183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 165
Target Start/End: Complemental strand, 24662764 - 24662707
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaa 165  Q
    |||||||| |||| ||||| ||||||| ||||||||||||||||||| ||| ||||||    
T  24662764 gtttacatgaatttttcaaatttaatacatgtagttataatatttttaaaattaaaaa 24662707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 37662707 - 37662768
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || |||||||||| ||||||||||||  ||||||||||||| ||| ||||||||||    
T  37662707 gtttagatgaattcttcaaatttaatatatgttcttataatatttttaaaattaaaaatata 37662768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 47063710 - 47063807
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| |||||||||||| ||| ||  ||| |||| |||||  | |||||||||| |||||||||||| ||||| ||||| || ||| ||||||||||    
T  47063710 gaactaaaaaattgtattggaagaggatttgagagggtttatgtgaattcttcaaatttaatatatgttgttattatattcttaaaattaaaaatata 47063807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 28880064 - 28880116
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  28880064 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 28880116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 43167088 - 43167048
Alignment:
Q  129 ttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||| |||||||||||||| ||| ||||||||||    
T  43167088 ttaatatatgttgttataatatttttaaaattaaaaatata 43167048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 48620362 - 48620414
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  48620362 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 48620414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 191 - 340
Target Start/End: Complemental strand, 33277951 - 33277804
Alignment:
Q  191 cggggcactagttaaggagcaataaataaatggattccctcaattaaagttaaaaataagtcagttaatgagaaaaattagaaacagttgtatttaatac 290  Q
    ||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||     
T  33277951 cggggcaccggttaaggagcaataaataaatggattcactcaattaaagttaaaaataagtcaattaataagaataattagaaacagttgtatttaatat 33277852  T
Q  291 ttgtaaatttattttcctttacacgtttatacaacacactcgcctccttt 340  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||||    
T  33277851 ttgtaaatttattttcctttaca--gttatacaacacactcgcctccttt 33277804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 202 - 331
Target Start/End: Original strand, 52006155 - 52006285
Alignment:
Q  202 ttaaggagcaataaataaatggattccctcaattaaagttaaaaataagtcagttaatgagaaaaattagaaacagttgtatttaatacttgt-aaattt 300  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |||| |||| |||||||||||||||| || ||||||    
T  52006155 ttaaggagcaataaataattggattccttcaattaaagttaaaaataagtcaattaatgagaataatttgaaatagttgtatttaatactcgtaaaattt 52006254  T
Q  301 attttcctttacacgtttatacaacacactc 331  Q
     |||||||||||||| |||||| ||||||||    
T  52006255 cttttcctttacacggttatactacacactc 52006285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 201 - 331
Target Start/End: Complemental strand, 39192681 - 39192552
Alignment:
Q  201 gttaaggagcaataaataaatggattccctcaattaaagttaaaaataagtcagttaatgagaaaaattagaaacagttgtatttaatacttgtaaattt 300  Q
    ||||||||||||||||||| || ||||||||||||||| || ||| ||||| | |||||||||| |||| ||||||||||||||||||||||||||| ||    
T  39192681 gttaaggagcaataaataattgaattccctcaattaaaatttaaa-taagttaattaatgagaataatttgaaacagttgtatttaatacttgtaaaatt 39192583  T
Q  301 attttcctttacacgtttatacaacacactc 331  Q
     |||||||||||||| |||||| ||||||||    
T  39192582 cttttcctttacacggttatactacacactc 39192552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 49183701 - 49183811
Alignment:
Q  61 tcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttataatattttttaaac 159  Q
    |||||||||  |||||| |||||||||||||||  || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| ||||||| |||     
T  49183701 tcctcatttggagaactaaaaaattgtattagaggagggttttggagggtttatatgaattcttcaaatttaatctatgttgttatattatttttaaaat 49183800  T
Q  160 taaaaatatag 170  Q
     ||||||||||    
T  49183801 aaaaaatatag 49183811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 1132988 - 1132891
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattc-ttcaatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||||||| ||  || ||||| ||| |||||||| ||||| || |||||||| ||||||||| ||||||| || ||| ||||||||||    
T  1132988 gaactcaaaaattgtattggaggagggttttggagggtttacatgaattctttaaatttaatctatgtagttgtaatattcttaaaattaaaaatata 1132891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 7302138 - 7302209
Alignment:
Q  99 gttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||| || |||||||| |||||||||| |||||| ||| ||||||||||||| || ||||||||||||||    
T  7302138 gttttaaagagtttacatgaattcttcaaatttaatctatatagttataatattcttaaaactaaaaatata 7302209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 217
Target Start/End: Original strand, 11654084 - 11654136
Alignment:
Q  165 atatagggtgttgttaaccggtgccccggggcactagttaaggagcaataaat 217  Q
    ||||||||||||| |||||| || | ||||||||| |||||||||||||||||    
T  11654084 atatagggtgttgctaaccgatgtcacggggcactggttaaggagcaataaat 11654136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 46891451 - 46891511
Alignment:
Q  110 tttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| ||||||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  46891451 tttatataaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 46891511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 52620915 - 52620791
Alignment:
Q  47 ataatacaaaatcatcctcatttaa-agaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtta 144  Q
    ||||||| ||||| |||||||||   ||||||||||||||||||| ||  || |||||   | ||| | || |||||||||| |||||||||||| ||||    
T  52620915 ataataccaaatcctcctcatttgggagaactcaaaaattgtattggaggagggttttgaggggttaatatgaattcttcaaatttaatatatgttgtta 52620816  T
Q  145 taatattttttaaactaaaaatata 169  Q
    |||||||||| |||  |||||||||    
T  52620815 taatatttttaaaataaaaaatata 52620791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 4247171 - 4247242
Alignment:
Q  99 gttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||  |||||||| |||||||||| |||||| ||| ||||||||||||| || ||| ||||||||||    
T  4247171 gttttagatagtttacatgaattcttcaaatttaatctatttagttataatattcttaaaattaaaaatata 4247242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 165
Target Start/End: Original strand, 11500155 - 11500222
Alignment:
Q  99 gttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaa 165  Q
    ||||| ||| |||||||| |||||||||| |||||||||||| ||||||||||| || ||| ||||||    
T  11500155 gttttggagagtttacattaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaa 11500222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 32858884 - 32858955
Alignment:
Q  99 gttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| ||| |||||||| ||||| |||| |||||| ||||||||||||||||| || ||| ||||||||||    
T  32858884 gttttggagggtttacatgaattcatcaaatttaatctatgtagttataatattcttaaaattaaaaatata 32858955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 38639579 - 38639702
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||| | |||||||||  || |||| |||||||||||| ||  || ||||| ||| ||| | |  |||||||||| |||||| ||||| |||    
T  38639579 cataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggagggttaataagaattcttcaaatttaatttatgttgtt 38639678  T
Q  144 ataatattttttaaactaaaaata 167  Q
    ||||||||||| ||| ||||||||    
T  38639679 ataatatttttaaaattaaaaata 38639702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 39966877 - 39966834
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||    
T  39966877 aatttaatatatgttgttataatatttttaaaattaaaaatata 39966834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 50201639 - 50201690
Alignment:
Q  118 aattcttcaatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||| ||||||||||  ||||||||||| || ||||||||||||||    
T  50201639 aattcttcaaattaatatatggtgttataatattcttaaaactaaaaatata 50201690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 53664690 - 53664567
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||| | |||||||||  || |||| |||||||||||| ||  || ||||| ||| ||| | |  |||||||||| |||||| ||||| |||    
T  53664690 cataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttcgagggttaataagaattcttcaaatttaatttatgttgtt 53664591  T
Q  144 ataatattttttaaactaaaaata 167  Q
    ||||||||||| ||| ||||||||    
T  53664590 ataatatttttaaaattaaaaata 53664567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 15499316 - 15499255
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||||| ||||| |||||| ||||||||||||||||| || ||| | ||||||||    
T  15499316 gtttacataaatttttcaaatttaatctatgtagttataatattcttaaaatttaaaatata 15499255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 18715731 - 18715702
Alignment:
Q  188 ccccggggcactagttaaggagcaataaat 217  Q
    ||||||||||||||||||||||||||||||    
T  18715731 ccccggggcactagttaaggagcaataaat 18715702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 27922025 - 27922086
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||| |||||||||| |||||| ||||| |||||||||||||  ||| ||||||||||    
T  27922025 gtttacatgaattcttcaaatttaatttatgttgttataatattttaaaaattaaaaatata 27922086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 29623300 - 29623361
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||| | | ||||||||||    
T  29623300 gtttatatgaattcttcaaatttaatatatgttgttataatatttttaatattaaaaatata 29623361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 35283151 - 35283212
Alignment:
Q  109 gtttacataaattcttca-atttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || ||||||||| ||||||||||||| ||||||||||| || ||| ||||||||||    
T  35283151 gtttatatgaattcttcatatttaatatatgttgttataatattcttaaaattaaaaatata 35283212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 37457031 - 37457107
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttataat 148  Q
    ||||||||| ||| |||||||  | | ||||||||  ||||||| |||||||| |||||||| ||||||||||||||    
T  37457031 gaactcaaagattctattagatgacatttttagaggatttacatgaattcttcgaatttaatctatgtagttataat 37457107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 340
Target Start/End: Complemental strand, 38452543 - 38452370
Alignment:
Q  169 agggtgttgttaaccggtgccccgggg-cactagttaaggagcaataaataaatggattccctcaattaaagttaaaaataagtcagttaatgagaaaaa 267  Q
    ||||||||| ||||||||| ||| ||  |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||    
T  38452543 agggtgttgctaaccggtgtccctggaacactggttaaggagcaataaataaatggattctctcaattaaagttaaaaataagtcaattaatgagaataa 38452444  T
Q  268 ttagaaacagttgtatttaatacttgt-aaatttattttcctttacacgtttatacaacacactcgcctccttt 340  Q
    ||| ||||||||||||||||||||||| |||||| |||||||||||||| ||| |||||||| ||| |||||||    
T  38452443 ttaaaaacagttgtatttaatacttgtaaaatttcttttcctttacacgattacacaacacattcgtctccttt 38452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 169 - 340
Target Start/End: Original strand, 42760499 - 42760672
Alignment:
Q  169 agggtgttgttaaccggtgc-cccggggcactagttaaggagcaataaataaatggattccctcaattaaagttaaaaataagtcagttaatgagaaaaa 267  Q
    |||||| ||||||||| ||| |||||| |||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||| || ||||||| ||    
T  42760499 agggtgctgttaaccgatgctcccgggacactggttaatgagcaataaataaatggattcccttaattaaagttaaaaataagtcaattgatgagaataa 42760598  T
Q  268 ttagaaacagttgtatttaatacttgt-aaatttattttcctttacacgtttatacaacacactcgcctccttt 340  Q
    ||| ||||||||||||||||||||||| |||||| ||||| |||||||| |||||||||||| |||||||||||    
T  42760599 ttaaaaacagttgtatttaatacttgtaaaatttcttttcttttacacgattatacaacacattcgcctccttt 42760672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 28848852 - 28848754
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||||||||||||| ||  || ||||| ||  |||||||| |||||||||| |||||| || ||||||||||||||||| ||| |||||||||||    
T  28848852 gaactcaaaaattgtattggaggagggttttggatggtttacatgaattcttcaaatttaatctaagtagttataatatttttaaaattaaaaatatag 28848754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 50226056 - 50226156
Alignment:
Q  71 aagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||| |||||||||||| ||  || ||||| ||| ||||| || |||||||| |||||||| ||||| |||||| ||||||| ||| ||||||||||    
T  50226056 aagaactaaaaaattgtattggaggagcgtttttgagggtttatatgaattcttctaatttaatctatgttgttatattatttttaaaattaaaaatata 50226155  T
Q  170 g 170  Q
    |    
T  50226156 g 50226156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 33643686 - 33643740
Alignment:
Q  98 agttttagagtgtttacataaattcttc-aatttaatatatgtagttataatatt 151  Q
    |||||||||| ||||||||||||||||| |||||||| |||||||| ||||||||    
T  33643686 agttttagagggtttacataaattcttcaaatttaatttatgtagtgataatatt 33643740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 169
Target Start/End: Original strand, 40243388 - 40243488
Alignment:
Q  72 agaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc---aatttaatatatgtagttataatattttttaaactaaaaatat 168  Q
    |||||| |||| || ||||||| |||||||| |||| ||||| |||||||||||   ||| |||| ||||| ||||||||||| || ||| |||||||||    
T  40243388 agaactaaaaagttatattagagaagagtttgagagagtttatataaattcttcaaaaatataatctatgttgttataatattcttaaaattaaaaatat 40243487  T
Q  169 a 169  Q
    |    
T  40243488 a 40243488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 41432779 - 41432718
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||| |||||||||| |||||| ||||||||||||||||| || ||| ||||||||||    
T  41432779 gtttacatgaattcttcaaatttaatctatgtagttataatattcttaaaattaaaaatata 41432718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 50476528 - 50476653
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaattt-aatatatgtagtt 143  Q
    ||||||||||||||  |||||||| | | ||||||||||||||||| ||  || ||||| ||| ||||| || |||| || ||||| ||| ||||| |||    
T  50476528 cataatacaaaatccccctcatttgagggaactcaaaaattgtattggaggagggttttcgagggtttatatgaattttttaatttcaatctatgttgtt 50476627  T
Q  144 ataatattttttaaactaaaaatata 169  Q
    |||||||| || ||| ||||||||||    
T  50476628 ataatattcttaaaattaaaaatata 50476653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 32287662 - 32287706
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||||||||| | |||||||||||| |||||||||||||||    
T  32287662 aatttaatatatgttgatataatatttttaaaactaaaaatatag 32287706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 170
Target Start/End: Original strand, 33324657 - 33324749
Alignment:
Q  79 aaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||||||||||  || ||||||||| ||||| || |||||||| ||||||||  |||| |||||| ||||||| ||| ||||| |||||    
T  33324657 aaaaattgtattagaggagggttttagagggtttatatgaattcttcaaatttaatcaatgttgttatattatttttaaaattaaaattatag 33324749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 114 - 169
Target Start/End: Complemental strand, 9315066 - 9315011
Alignment:
Q  114 cataaattcttcaatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||| ||||| ||||||||||||||||| || ||| | ||||||||    
T  9315066 cataaattcttcaaattaatctatgtagttataatattcttaaaatttaaaatata 9315011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 9861316 - 9861273
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||    
T  9861316 aatttaatatatgttgttataatatttttaaaattaaaaatata 9861273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 15426325 - 15426249
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaatttaatatatgtagttataatatt 151  Q
    |||||||||||||||||| || ||||||||| | | |||||||| |||| |  |||||||| |||||| ||||||||||    
T  15426325 gaactcaaaaattgtattggagaagagttttggggggtttacatgaattgt--aatttaatttatgtatttataatatt 15426249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 39886950 - 39886880
Alignment:
Q  100 ttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| ||| ||||| || |||||||||| |||||| ||||| |||||| ||||||| ||||||||||||||    
T  39886950 ttttggagagtttatatgaattcttcaaatttaatctatgttgttatattatttttaaaactaaaaatata 39886880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 12377212 - 12377261
Alignment:
Q  169 agggtgttgttaaccggtgcc-ccggggcactagttaaggagcaataaat 217  Q
    ||||||||| ||||||||||| ||||| |||| |||||||||||||||||    
T  12377212 agggtgttgctaaccggtgcctccgggacactggttaaggagcaataaat 12377261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 20712233 - 20712172
Alignment:
Q  109 gtttacataaattcttcaattt-aatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| ||||||||||||| || ||| ||||| |||||||||||||| ||| ||||||||||    
T  20712233 gtttatataaattcttcaaattcaatctatgttgttataatatttttaaaattaaaaatata 20712172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 34750014 - 34749973
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaata 167  Q
    |||||||| |||||||||||||||||||| ||| ||||||||    
T  34750014 aatttaatttatgtagttataatatttttaaaattaaaaata 34749973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 52073511 - 52073414
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaattt-aatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||||| ||||  || ||||| ||| ||||| || |||| ||||| || ||| || |||||||||||||| || ||| ||||||||||    
T  52073511 gaactcaaaaattgtactagaggagggttttggagggtttagatgaatttttcaaattcaatctaagtagttataatattcttaaaattaaaaatata 52073414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 170 - 340
Target Start/End: Complemental strand, 15451255 - 15451082
Alignment:
Q  170 gggtgttgttaaccggtgcc-ccggggcactagttaaggagcaataaataaatggattccctcaattaaagtta-aaaataagtcagttaatgagaaaaa 267  Q
    ||||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||||||  |||||||||| |||||||||| ||    
T  15451255 gggtgctgctaaccggtgcctccggggcactggttaaggagcaataaataaatggattctctcaattaaagttattaaataagtcaattaatgagaataa 15451156  T
Q  268 ttagaaacagttgtatttaatacttgt-aaatttattttcctttacacgtttatacaacacactcgcctccttt 340  Q
    ||| ||| ||||||||||||||||||| |||||| ||||||||| |||| |||||||||||| |||||||||||    
T  15451155 ttaaaaatagttgtatttaatacttgtaaaatttcttttcctttgcacgattatacaacacattcgcctccttt 15451082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 169
Target Start/End: Original strand, 16424165 - 16424263
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagtttt-agagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| |||||||||||||||  ||  |||| |||| ||||| || |||||||||| |||||||||||||||||||||||| || ||| ||||||||||    
T  16424165 gaactaaaaaattgtattagaggaggattttgagagggtttatatgaattcttcaaatttaatatatgtagttataatattcttaaaattaaaaatata 16424263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 27085412 - 27085473
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || |||||||||| |||||||||||| |||||||||||||||||| ||||||||||    
T  27085412 gtttatatgaattcttcaaatttaatatatgttgttataatattttttaaattaaaaatata 27085473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 3393974 - 3394054
Alignment:
Q  47 ataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa 127  Q
    ||||||||||||| |||||||||| |||||||||||||| |||| ||  ||||||||  |  |||||||| ||||||||||    
T  3393974 ataatacaaaatcctcctcatttagagaactcaaaaattatattggaggagagtttttcaaggtttacatcaattcttcaa 3394054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 208
Target Start/End: Original strand, 13904001 - 13904043
Alignment:
Q  166 tatagggtgttgttaaccggtgccccggggcactagttaagga 208  Q
    |||||||| ||||||||||||||||||||||||| ||||||||    
T  13904001 tatagggttttgttaaccggtgccccggggcactggttaagga 13904043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 170
Target Start/End: Complemental strand, 41866179 - 41866082
Alignment:
Q  74 aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||| |||||||||||| ||  || |||||  || ||||| ||||||||||||| |||||| ||||| |||||| ||||||| ||| |||||||||||    
T  41866179 aactaaaaaattgtattggaggagggttttgaagggtttatataaattcttcaaatttaatctatgttgttatattatttttaaaattaaaaatatag 41866082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 5704364 - 5704312
Alignment:
Q  169 agggtgttgttaaccggtgcccc-ggggcactagttaaggagcaataaataaa 220  Q
    ||||||||| ||||| ||||||| |||||||| ||||||||||||||||||||    
T  5704364 agggtgttgctaaccagtgcccctggggcacttgttaaggagcaataaataaa 5704312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 1839847 - 1839776
Alignment:
Q  99 gttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| |||| ||||| || |||||||||| |||||||||||| |||||||||||||| ||| |||| |||||    
T  1839847 gtttaagagggtttatatgaattcttcaaatttaatatatgttgttataatatttttaaaattaaacatata 1839776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 10878809 - 10878738
Alignment:
Q  99 gttttagagtgtttacataaattcttca-atttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| |||| ||||| || | ||||||| ||||||||||||| |||||||||||||| ||| ||||||||||    
T  10878809 gtttgagagggtttatatgagttcttcacatttaatatatgttgttataatatttttaaaattaaaaatata 10878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 26772733 - 26772610
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||| | || |||||| ||| |||| |||||||||||| ||  || ||||| ||| ||| | |  |||||||||| |||||| ||||| |||    
T  26772733 cataatacaaaaccctcatcatttgaaggaactaaaaaattgtattggatgagggttttggagggttaataagaattcttcaaatttaatttatgttgtt 26772634  T
Q  144 ataatattttttaaactaaaaata 167  Q
    ||||||||||| ||| ||||||||    
T  26772633 ataatatttttaaaattaaaaata 26772610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 28517259 - 28517216
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||||||||||||||| || ||| ||||||||||    
T  28517259 aatttaatatatgtagttataatattcttaaaattaaaaatata 28517216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 32188 - 32278
Alignment:
Q  80 aaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||||||  |||||||| ||  ||||| || |||||||| ||| |||| ||||| ||||||||||| || ||| ||||||||||    
T  32188 aaaattgtattagaggagagtttttgacggtttatatgaattcttcaaatgtaatttatgttgttataatattcttaaaattaaaaatata 32278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 41455323 - 41455384
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || |||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  41455323 gtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 41455384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 32158850 - 32158890
Alignment:
Q  129 ttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||| |||||||||||||| ||| ||||||||||    
T  32158850 ttaatatatgttgttataatatttttaaaattaaaaatata 32158890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 19389908 - 19389784
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtta 144  Q
    |||||||||||||| |||||||||   ||||| |||||||||||| ||  ||  |||| ||| |||||||| |||||||||| |||||| ||||||||||    
T  19389908 cataatacaaaatcctcctcatttggggaactaaaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatttaatctatgtagtta 19389809  T
Q  145 taatattttttaaactaaaaatata 169  Q
    |||||||||| ||| ||||||||||    
T  19389808 taatatttttaaaattaaaaatata 19389784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 13294064 - 13293940
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtta 144  Q
    |||||||||||||| |||||||||||  |||| |||||||||||| ||  || || || ||| ||||| ||  ||||||||| |||||| | ||| ||||    
T  13294064 cataatacaaaatcctcctcatttaagaaacttaaaaattgtattggaggagggtcttggagggtttatatgtattcttcaagtttaatctctgttgtta 13293965  T
Q  145 taatattttttaaactaaaaatata 169  Q
    |||||||||| |||  |||||||||    
T  13293964 taatatttttaaaataaaaaatata 13293940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 47 - 170
Target Start/End: Original strand, 10437977 - 10438102
Alignment:
Q  47 ataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtta 144  Q
    ||||||||||||| |||||||||| || |||| |||| ||||||| ||  || ||||| ||| ||| | || |||||||||| |||||| ||||| | ||    
T  10437977 ataatacaaaatcctcctcatttagaggaactaaaaagttgtattggaggagggttttggagggttaatatcaattcttcaaatttaatctatgttgcta 10438076  T
Q  145 taatattttttaaactaaaaatatag 170  Q
    || ||||||| ||| |||||||||||    
T  10438077 tactatttttaaaattaaaaatatag 10438102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 29799701 - 29799762
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| ||||||||||||| ||||||||||||  ||||||||||||| ||| ||||||||||    
T  29799701 gtttatataaattcttcaaatttaatatatgttattataatatttttaaaattaaaaatata 29799762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 12063985 - 12063942
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||||| |||||||||||||| ||| ||||||||||    
T  12063985 aatttaatatatgttgttataatatttttaaaattaaaaatata 12063942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 17668160 - 17668090
Alignment:
Q  100 ttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| ||| |||||||| |||||||||| |||||| ||||||||||||||||| || ||| | ||||||||    
T  17668160 ttttggagggtttacatgaattcttcaaatttaatctatgtagttataatattcttaaaattgaaaatata 17668090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 8316453 - 8316396
Alignment:
Q  160 taaaaatatagggtgttgttaaccggtgccccggggcactagttaaggagcaataaat 217  Q
    ||||| || |||||| || |||||| |||||||| ||||| |||||||||||||||||    
T  8316453 taaaattaaagggtgctgctaaccgatgccccggagcactggttaaggagcaataaat 8316396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 1935115 - 1935063
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  1935115 aattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 1935063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 2679885 - 2679841
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||| ||||| |||||||||||||| ||| |||||||||||    
T  2679885 aatttaatctatgttgttataatatttttaaaattaaaaatatag 2679841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Complemental strand, 5088878 - 5088826
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||| |||||| ||||||||||||||||| || ||| ||||||||||    
T  5088878 aattcttcaaatttaatttatgtagttataatattcttaaaattaaaaatata 5088826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 6632701 - 6632773
Alignment:
Q  97 gagttttagagtgtttacataaattcttcaatttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||| |||| ||||| || |||| ||||| |||||||||||  |||||||||| || ||| ||||||||||    
T  6632701 gagtttgagagggtttatatgaattattcaaattaatatatgttattataatattcttaaaattaaaaatata 6632773  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 168
Target Start/End: Original strand, 41923186 - 41923282
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatat 168  Q
    ||||| || ||||||| ||||| ||| ||||  || ||||| || |||||||||| |||||| ||||| |||||||||||||| | | |||||||||    
T  41923186 gaactaaacaattgtactagaagagaattttgaagggtttatatgaattcttcaaatttaatctatgttgttataatatttttaagattaaaaatat 41923282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 151
Target Start/End: Original strand, 13380530 - 13380638
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag--aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagt 142  Q
    ||||||| ||||||||||||||||   |  ||||||||||||||||| ||| || ||||| ||| ||||||||||||||||| |||||||| ||||||||    
T  13380530 cataatataaaatcatcctcatttggggggaactcaaaaattgtattggaagagggttttggagcgtttacataaattcttcaaatttaatctatgtagt 13380629  T
Q  143 tataatatt 151  Q
    |||||||||    
T  13380630 tataatatt 13380638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 170
Target Start/End: Complemental strand, 20820593 - 20820495
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    ||||| |||||||||||| ||  ||||||||||||  |||| || |||| ||||| |||||||||||| |||||| ||||||| ||| |||||||||||    
T  20820593 gaactaaaaaattgtattggatgagagttttagaggatttatatgaatttttcaaatttaatatatgttgttatattatttttaaaattaaaaatatag 20820495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 32719467 - 32719344
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||| | |||||||||  || |||| |||||||||||| ||  || ||||| ||| ||| | |  |||||||||| |||||| ||||| |||    
T  32719467 cataatacaaaaccctcctcatttggaggaactaaaaaattgtattggaggagggttttggagggttaataagaattcttcaaatttaatttatgttgtt 32719368  T
Q  144 ataatattttttaaactaaaaata 167  Q
    ||||||||||| ||| ||||||||    
T  32719367 ataatatttttaaaattaaaaata 32719344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 1603996 - 1604054
Alignment:
Q  169 agggtgttgttaaccggtgcccc-ggggcactagttaaggagcaataaataaatggatt 226  Q
    ||||||||| ||||||||||||| |||||||| |||||| |||||||||| ||| ||||    
T  1603996 agggtgttgctaaccggtgcccccggggcactggttaagaagcaataaatgaatagatt 1604054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 20381883 - 20381822
Alignment:
Q  109 gtttacataaattcttcaattt-aatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| || ||||||||||||| ||||||||| ||||||||||| || ||| ||||||||||    
T  20381883 gtttatatgaattcttcaattttaatatatgttgttataatattcttaaaattaaaaatata 20381822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 34557225 - 34557128
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||||||| || ||  ||| ||||  || |||||||| |||||||||| ||||||  ||||| ||||||||||||| ||  ||||||||||    
T  34557225 gaactcaaaaattgttttggaggagaattttgaagcgtttacatgaattcttcaaatttaatcaatgtatttataatatttttaaagttaaaaatata 34557128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 169
Target Start/End: Original strand, 26713862 - 26713978
Alignment:
Q  54 aaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttataatattt 152  Q
    |||||| |||||||||   |||||||||||||||||| ||  || ||||| ||| ||||| || |||||||| |||||| | ||||| |||||| ||||     
T  26713862 aaaatcctcctcatttggggaactcaaaaattgtattggaggagggttttggagggtttatatgaattcttcaaatttattctatgttgttatattattc 26713961  T
Q  153 tttaaactaaaaatata 169  Q
    || | | ||||||||||    
T  26713962 ttaatattaaaaatata 26713978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0991 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 46 - 153
Target Start/End: Original strand, 3239 - 3348
Alignment:
Q  46 cataatacaaaatcatcctcatttaaagaactcaaaa-attgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||||| |||||||||   ||||| |||| ||||||||||| ||||||||||||| ||||| |  |||||||||| |||||| ||||| |||    
T  3239 cataatacaaaatcctcctcatttggggaacttaaaaaattgtattagagaagagttttagagggtttatacgaattcttcaattttaatctatgttgtt 3338  T
Q  144 ataatatttt 153  Q
    ||||||||||    
T  3339 ataatatttt 3348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 69028 - 68925
Alignment:
Q  47 ataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaatttaatatatgtagttata 146  Q
    ||||||||||||| | |  |||| | |||| ||||||||||||||||  |||||||| |   |||||||| ||||||||||||||||||||||| |||||    
T  69028 ataatacaaaatctttcaaattttaggaacacaaaaattgtattagaggagagtttttggaggtttacatgaattcttcaatttaatatatgtaattata 68929  T
Q  147 atat 150  Q
    ||||    
T  68928 atat 68925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 39856454 - 39856349
Alignment:
Q  47 ataatacaaaatcatcctcatttaaagaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttc-aatttaatatatgtagttat 145  Q
    |||||||||||||||||||||||    |||| |||| ||||||| ||  ||||||||||| |||||| || |||||||| |||||| |||| || |||||    
T  39856454 ataatacaaaatcatcctcatttcggaaactaaaaagttgtattggatgagagttttagaatgtttatatgaattcttcaaatttattatacgttgttat 39856355  T
Q  146 aatatt 151  Q
    ||||||    
T  39856354 aatatt 39856349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 169
Target Start/End: Complemental strand, 43348292 - 43348195
Alignment:
Q  73 gaactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| |||||||||||||||  || ||||| ||| ||| | || |||||||||| |||||| ||||| |||||||||||||| ||| ||||||||||    
T  43348292 gaactaaaaaattgtattagaggagggttttggagggttaatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatata 43348195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 80 - 170
Target Start/End: Complemental strand, 38505390 - 38505299
Alignment:
Q  80 aaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    ||||||||||| ||  || ||||| ||| ||||| || |||||||||| |||||| ||||| |||||||||||||| ||| |||||||||||    
T  38505390 aaaattgtattggaggagggttttggagggtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatatag 38505299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 21687497 - 21687558
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||| ||||||||||||| ||||||||| || |||||||||||||| ||| ||||||||||    
T  21687497 gtttatataaattcttcaaatttaatataagttgttataatatttttaaaattaaaaatata 21687558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 7347907 - 7347843
Alignment:
Q  106 agtgtttacataaattcttcaat-ttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    ||||||||||| ||||||||||  || || |||||||||||||||||||| ||| ||||||||||    
T  7347907 agtgtttacatgaattcttcaaagtttatctatgtagttataatatttttaaaattaaaaatata 7347843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 1277992 - 1278063
Alignment:
Q  99 gttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| |||| ||||| || |||||||||| |||||||||||| ||||||||||| || ||| ||||||||||    
T  1277992 gtttgagagggtttatatgaattcttcaaatttaatatatgttgttataatattcttaaaattaaaaatata 1278063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 33872146 - 33872075
Alignment:
Q  100 ttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||| ||| ||||| || |||||||||| |||||| ||||| |||||| ||||||||||| |||||||||||    
T  33872146 ttttggagggtttatatgaattcttcaaatttaatctatgttgttatattattttttaaattaaaaatatag 33872075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 45940491 - 45940368
Alignment:
Q  46 cataatacaaaatcatcctcatttaaag-aactcaaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagtt 143  Q
    |||||||||||| | |||||||||  || |||| |||||||||||| ||  |||||||| ||| ||| | |  |||||||||| |||||| ||||| | |    
T  45940491 cataatacaaaaccctcctcatttggaggaactaaaaaattgtattggagtagagttttggagggttaataagaattcttcaaatttaatttatgttgct 45940392  T
Q  144 ataatattttttaaactaaaaata 167  Q
    ||||||||||| ||| ||||||||    
T  45940391 ataatatttttaaaattaaaaata 45940368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 13044211 - 13044273
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    ||||| || |||||||||| |||||||||||| |||||| ||||||| ||| |||||||||||    
T  13044211 gtttatatgaattcttcaaatttaatatatgttgttatattatttttaaaattaaaaatatag 13044273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 14676285 - 14676355
Alignment:
Q  100 ttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||| ||| |||||||| |||||||||| |||||| ||||||||||||||||| || ||| | ||||||||    
T  14676285 ttttggagggtttacatgaattcttcaaatttaatctatgtagttataatattcttaaaattgaaaatata 14676355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 4788000 - 4787959
Alignment:
Q  128 tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||||| |||||||||||||| ||| ||||||||||    
T  4788000 tttaatatatgttgttataatatttttaaaattaaaaatata 4787959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 35264891 - 35264847
Alignment:
Q  126 aatttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||||||| ||||| |||||||||||||| ||| |||||||||||    
T  35264891 aatttaatttatgttgttataatatttttaaaattaaaaatatag 35264847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 169
Target Start/End: Original strand, 43741768 - 43741820
Alignment:
Q  118 aattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatata 169  Q
    |||||||||| |||||| |||||| ||||||||||||| ||| ||||||||||    
T  43741768 aattcttcaaatttaatttatgtaattataatatttttaaaattaaaaatata 43741820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 37176 - 37247
Alignment:
Q  100 ttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    |||| ||| ||||| || |||||||||| |||||||||||| |||||| ||||||| ||| |||||||||||    
T  37176 ttttggagggtttatatgaattcttcaaatttaatatatgttgttatattatttttaaaattaaaaatatag 37247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 170
Target Start/End: Complemental strand, 12276 - 12214
Alignment:
Q  109 gtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatatag 170  Q
    ||||| || |||||||||| |||||| ||||| |||||||||||||| ||| |||||||||||    
T  12276 gtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatatag 12214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 168
Target Start/End: Complemental strand, 90932 - 90842
Alignment:
Q  79 aaaaattgtattagaaaagagttttagagtgtttacataaattcttcaa-tttaatatatgtagttataatattttttaaactaaaaatat 168  Q
    |||||||||||| ||  || ||||| ||  ||||| || |||||||||| |||||| ||||| |||||||||||||| ||| |||||||||    
T  90932 aaaaattgtattggaggagggttttggatggtttatatgaattcttcaaatttaatctatgttgttataatatttttaaaattaaaaatat 90842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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