View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3010_high_5 (Length: 341)
Name: NF3010_high_5
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 55942942 - 55943258
Alignment:
| Q |
16 |
cagatgatgatctgcagagggctatggattgggcttgtcatgtgggtggagcaaattgcagcaatatacaagttaatcatccatgttaccttccaaatac |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55942942 |
cagatgatgatctgcagagggctatggattgggcttgtcatgtgggtggagcaaattgcagcaatatacaagttaatcatccatgttaccttccaaatac |
55943041 |
T |
|
| Q |
116 |
catgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctatttcaactctgctgcaataaccagtgat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55943042 |
catgaaggatcatgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctatttcaactctgctgcaataaccagtgat |
55943141 |
T |
|
| Q |
216 |
ctcgatccaagtaaataatctctcataattcatcttaaaagctatcaattttgatgctttatcctttcatttatttacatatagtaacaattaggaagat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
55943142 |
ctcgatccaagtaaataatctctcataattcatcttaaaagctatcaatttttatgctttatcctttcatttatttacatatagtaacaattagtaagat |
55943241 |
T |
|
| Q |
316 |
acattgaatacctatgc |
332 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
55943242 |
acattgaatacctatgc |
55943258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 27 - 239
Target Start/End: Original strand, 55946315 - 55946527
Alignment:
| Q |
27 |
ctgcagagggctatggattgggcttgtcatgtgggtggagcaaattgcagcaatatacaagttaatcatccatgttaccttccaaataccatgaaggatc |
126 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||| | |||||||||| |||||||| || || || ||||||||||||||||| ||||||||| |
|
|
| T |
55946315 |
ctgcagagggccatggattacgcttgtcatgtggatggagtagattgcagcaagatacaagtgaaccaaccttgttaccttccaaatactgtgaaggatc |
55946414 |
T |
|
| Q |
127 |
atgcttcctatgtcttcaacaattactatcagaagttcaagcacaaaggaggatcttgctatttcaactctgctgcaataaccagtgatctcgatccaag |
226 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||||| ||||||||| ||||| |||||||||||||||| |||||||||||| |||| | || ||||| |
|
|
| T |
55946415 |
atgcttcctatgccttcaacgattactatcagaagtacaagcacaagggaggctcttgctatttcaactatgctgcaataacaagtgcttctgacccaag |
55946514 |
T |
|
| Q |
227 |
taaataatctctc |
239 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
55946515 |
taaattatctctc |
55946527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University