View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010_low_1 (Length: 492)
Name: NF3010_low_1
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 46502507 - 46502734
Alignment:
| Q |
18 |
ctttgattccctctttctcatgttttcttacacttttttgaataaacaataattttcatgctaaatatgtgaaaatttcacacaataatcattaaatcta |
117 |
Q |
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| T |
46502507 |
ctttgattccctctttctcatgttttcttacacttttttgaataaacaataattttcatgctaaatatgtgaaaatttcacacaataatccttaaatcta |
46502606 |
T |
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| Q |
118 |
tcaaaaaatttaacacattagtgtcttctttgtgataattttatgtattgaccaataaatttttagtaaaacttttttatttgaataagccaacagattt |
217 |
Q |
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| T |
46502607 |
tcaaaaattttaacacattagtgtcttctttgtgataattttatgtattgaccaataaatttttactaaaacttttttatttgaataagccaacagattt |
46502706 |
T |
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| Q |
218 |
ttatcaaaacaaaacaaactaactaact |
245 |
Q |
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| T |
46502707 |
ttattaaaacaaaacaaactaactaact |
46502734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 264 - 482
Target Start/End: Original strand, 46502760 - 46502979
Alignment:
| Q |
264 |
atgtattgatcggactttatttaacttctaataaactcatcagggtctctttcatctaagaatcaaagggataacaaaaactaactaactaaaaacacat |
363 |
Q |
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|||||||| || ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
46502760 |
atgtattggtcagactttacttagcttccaataaactcatcagggtctctttcatctaagaatcaaagggataacaaaaactagccaactaaaaacacat |
46502859 |
T |
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| Q |
364 |
gacttgagaattcaaatgacttnnnnnnnncaaagacaaatttacatatgattttgtaattttaatatatgtatgtac-tatttaacatttaaggatgaa |
462 |
Q |
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| T |
46502860 |
gacttgagaattcaaatgacttaaaaaaaacaaagacaaatttacatatgattttgtaattttaatatatgtatgtacttatttaacatttaaggatgaa |
46502959 |
T |
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| Q |
463 |
aaagactatttagccctatg |
482 |
Q |
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| T |
46502960 |
aaagactatttagccctatg |
46502979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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