View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010_low_2 (Length: 461)
Name: NF3010_low_2
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 205 - 442
Target Start/End: Complemental strand, 40071203 - 40070966
Alignment:
| Q |
205 |
agaaaaggaaccaacctgttgaacaatgttcttttggattcttgattggataaatcgatgtgaagcgagttgttatcagaatcagagtgagaagtgaaag |
304 |
Q |
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| T |
40071203 |
agaaaaggaaccaacctgttgaacaaggttcttttggattcttgattggataaatcgatgtgaagcgagttgttatcagaatcagagtgagaagtgaaag |
40071104 |
T |
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| Q |
305 |
gggaaatcttatgatatagaaaaacaggcctgaggagtgtggttgattgtggcttcgaagaattgaggactctgtgaacgcttactgcaactcttttcgc |
404 |
Q |
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| T |
40071103 |
gggaaatcttatgatatccaaaaacaggcctgaggagtgtggttgattgtggctgcgaagaattgaggactctgtgaacgcttactgcaactcttttcac |
40071004 |
T |
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| Q |
405 |
aagtagagaagccatttcgatttcgttaatcttcctaa |
442 |
Q |
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| T |
40071003 |
aagtagagaagccatttcgatttcgttaatcttcctaa |
40070966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 40071424 - 40071245
Alignment:
| Q |
9 |
gagatgaatgagagatcgaatatgattttcatcgagggagtggatattgttctgtacccattttccaagaaccaaatcgagttcgagaaaccctcgttgc |
108 |
Q |
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| T |
40071424 |
gagatgaatgagagatcgaatatgattttcatcgagggagtggatattgttctgtacccattttccaagaaccagatcgagttcgagaaaccctcgttgc |
40071325 |
T |
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| Q |
109 |
ttgcttctatacaataacctatcagtagt------agtattaacacaagagaggtttatttatttatcatcataacaaaa |
182 |
Q |
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| T |
40071324 |
ttgcttctatacaataacctatcagtagtagtagtagtagtaacacaagagaggtttatttatttatcatcataacaaaa |
40071245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 44968993 - 44968912
Alignment:
| Q |
49 |
tggatattgttctgtacccattttccaagaaccaaatcgagttcgagaaaccctcgttgcttgcttctatacaataacctat |
130 |
Q |
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| T |
44968993 |
tggatattatcctctacccatttgccaagaaccaagtccagttccagaaacccgcgttgtttgcttctatataataacctat |
44968912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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