View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010_low_4 (Length: 417)
Name: NF3010_low_4
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 4 - 401
Target Start/End: Complemental strand, 41581071 - 41580673
Alignment:
| Q |
4 |
atgaaagggagttacaaaagtaaaagcacttaaaaaa-ttcatgataacaatctggacttcacaaagcttgaacaaattaataggcttattctcttacac |
102 |
Q |
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| T |
41581071 |
atgaaagggagttccaaaagtaaaagcacttaaaaaaattcatgataacaatctggacttcacaaagcttgaacaaattaataggcttattctcttacac |
41580972 |
T |
|
| Q |
103 |
tttgttttagaaggatctctccaagactgctgttnnnnnnnnnnnnntctccttagtcctttcaactgggttaagattcacatttataggaatccttaac |
202 |
Q |
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| T |
41580971 |
tttgttttagaaggatctcaccaagactgttgttcacacacacacactctccttagtcctttcaactgggttaagattcacatttataggaatccttaac |
41580872 |
T |
|
| Q |
203 |
cataaaaagatccttaacctctagctactctctttctatttaggtttattttacatttctcaatagcaactaggtaaagagcataggcttctttaatcac |
302 |
Q |
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| T |
41580871 |
cataaaaagatccttaacctctagctactctctttctatttaggtttattttacatttctcaatagcaactaggtaaagagcataggcttctttaatcac |
41580772 |
T |
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| Q |
303 |
atctttcttagaaaaccaagttaacttcgagtgcggtctgtatgtattatatgtatcttgatttgcatatatataattataaactgtttgtgtgaatgt |
401 |
Q |
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| T |
41580771 |
atctttcttagaaaaccaagttaacttcgagtgcggtctgtatgtattatatgtatcttgatttgcatatatataattataaactgtttgtgtgaatgt |
41580673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 327
Target Start/End: Original strand, 40180383 - 40180430
Alignment:
| Q |
280 |
agagcataggcttctttaatcacatctttcttagaaaaccaagttaac |
327 |
Q |
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| T |
40180383 |
agagcataggcttctttaatcatattatttttagaaaaccaagttaac |
40180430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 207
Target Start/End: Original strand, 42127944 - 42127982
Alignment:
| Q |
169 |
tgggttaagattcacatttataggaatccttaaccataa |
207 |
Q |
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| T |
42127944 |
tgggttaagattcatatttaaaggaatccttaaccataa |
42127982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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