View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3010_low_7 (Length: 299)
Name: NF3010_low_7
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 14861457 - 14861587
Alignment:
| Q |
1 |
aactaaactcaatgaaatccaaatctaaagttgttcctaattcctattttactaagcagcttttttcatcaatctcttaatgatcatgaccatcataata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14861457 |
aactaaactcaatgaaatccaaatctaaagttgttcctaattcctattttactaagcagcttttttcatcaatctcttaatgatcatgaccatcataata |
14861556 |
T |
|
| Q |
101 |
atcaatatccattaattgaaatttgacgaag |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14861557 |
atcaatatccattaattgaaatttgacgaag |
14861587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 14865685 - 14865819
Alignment:
| Q |
3 |
ctaaactcaatgaaatccaaatctaaagttgttcctaattcctattttactaagcagcttttttcatcaatctcttaatgatcatgaccatc--ataata |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
14865685 |
ctaaactcaatgaaatccaaatgtaaagttgttcctaattcctatcttactaagcagtttttttcatcaatttcttaatgatcatgatcatcaaataata |
14865784 |
T |
|
| Q |
101 |
atca----atatccattaattgaaatttgacgaag |
131 |
Q |
| |
|
|||| ||||||| |||||||||||||| |||| |
|
|
| T |
14865785 |
atcaatatatatccactaattgaaatttgatgaag |
14865819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 25358804 - 25358868
Alignment:
| Q |
7 |
actcaatgaaatccaaatctaaagttgttcctaattcctattttactaagcagcttttttcatcaa |
72 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
25358804 |
actcaattaaatccaaatctaaagttgttcctaattcctatcttactaagcag-ttttttcatcaa |
25358868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 14861695 - 14861729
Alignment:
| Q |
249 |
tgaattgacttacataggtattgagctgacggatg |
283 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14861695 |
tgaattgacttacataggtattgagctgacggatg |
14861729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 35144490 - 35144430
Alignment:
| Q |
63 |
ttttcatcaatctcttaatgatcatgaccatcataataatcaatatccattaattgaaatt |
123 |
Q |
| |
|
|||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
35144490 |
ttttcatcaatcagttaatgatcatgatcatcataataatcaatatccactaattgaaatt |
35144430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35144523 - 35144489
Alignment:
| Q |
1 |
aactaaactcaatgaaatccaaatctaaagttgtt |
35 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35144523 |
aactagactcaatgaaatccaaatctaaagttgtt |
35144489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University