View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3010_low_8 (Length: 285)
Name: NF3010_low_8
Description: NF3010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3010_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 267
Target Start/End: Complemental strand, 26969573 - 26969319
Alignment:
| Q |
13 |
cagaaggcgaaggaaacgaaagacgcaacagctcagaaggcgaaggaaacaaaagatgcaacgatgcagaaaactaatgagtatgcaggttatgccggag |
112 |
Q |
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| T |
26969573 |
cagaaggcgaaggaaacgaaagacgcaacagctcagaaggcgaaggaaacaaaagatgcaacgatgcagaaaactaatgagtatgcaggttatgccggag |
26969474 |
T |
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| Q |
113 |
agaaagcaagggaagccaaggacaaagctggggagtacaaagactatgctgcggaaaaggcaaaggaaggaaaagatgctaccatgaataagatgggtga |
212 |
Q |
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| T |
26969473 |
agaaagcaagggaagccaaggacaaagctggggagtacaaagactatgctgcggaaaaggcaaaggaaggaaaagatgctaccatgaataagatgggtga |
26969374 |
T |
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| Q |
213 |
gtataaggattatacggctgagaaggcgaaagaagggaaagatgccaccctgaat |
267 |
Q |
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| T |
26969373 |
gtataaggattatacggctgagaaggcgaaagaagggaaagatgccaccatgaat |
26969319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 251
Target Start/End: Complemental strand, 26969351 - 26969269
Alignment:
| Q |
169 |
aaggcaaaggaaggaaaagatgctaccatgaataagatgggtgagtataaggattatacggctgagaaggcgaaagaagggaa |
251 |
Q |
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| T |
26969351 |
aaggcgaaagaagggaaagatgccaccatgaataagatgggtgagtataaggattatacagctgagaaggcgaaggaagggaa |
26969269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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