View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3011_high_1 (Length: 894)
Name: NF3011_high_1
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 682; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 682; E-Value: 0
Query Start/End: Original strand, 5 - 879
Target Start/End: Original strand, 34794934 - 34795821
Alignment:
| Q |
5 |
gcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatg |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34794934 |
gcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttggctgttgtccaatg |
34795033 |
T |
|
| Q |
105 |
cttctatggaggaaaagcatggatgatgnnnnnnn-ttagaacgcgttacagagaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| || |||||| ||||||||||||||||| |
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|
| T |
34795034 |
cttctatggaggaaaagcatggatgatgaaaaaaaattagaacgcgttagagagaagagaaactgaaaaggcgtgcatgcaatttataaccagagtgaag |
34795133 |
T |
|
| Q |
204 |
ggaataagaagacgcgtgtgtttctattctttaattgacgacaacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatg |
303 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
34795134 |
ggaataagaagaggcgtgtgtttctattctttaattgacgacaacttaacttttctaacaacatgggaggtttgtgtcatgtgacaaaatagaggagatg |
34795233 |
T |
|
| Q |
304 |
tcagtgtcatttnnnnnnnccttaggagtcactggtgtannnnnnnnnnnnnnctaatatcaaactagtaaacaataatcttattttctgactcactttc |
403 |
Q |
| |
|
| ||||||||| ||||||||||||| | |||| |||||||||||||| ||||||||||||||||||||| |||||||||| |
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|
| T |
34795234 |
gctgtgtcatttaaagaaaccttaggagtcaccgatgtatttttcctttttttctaatatcaaactactaaacaataatcttattttctcactcactttc |
34795333 |
T |
|
| Q |
404 |
ttttctctttctatctttaatatctttcctccctcaaccaaacaaaaaataaagaaggtaggaagactacaaaatgtggatcttattttcactttct--- |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795334 |
ttttctctttctatctttaatatctttcctccctcaaccaaacaaaaaataaagaaggtaggaagactacaaaatgtggatcttattttcactttctttt |
34795433 |
T |
|
| Q |
501 |
--------atcttttatgagggactaaattagatctt-gcaatttttctaagagactataagctaagacatggatcttcaaggccaaatgaataggtgaa |
591 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795434 |
ctctttctatcttttatgaggggctaaattagatcttagcaatttttctaagagactataagctaagacatggatcttcaaggccaaatgaataggtgaa |
34795533 |
T |
|
| Q |
592 |
gcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattccttgcttggaaagcacacaatgacgtggtttgaa |
691 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
34795534 |
gcttcttggagaaggcaagtgaagtgagcccaagacccaaagcacaagcacccttaagttgaattccttgcttggaaagcacacaattacgtggtttgaa |
34795633 |
T |
|
| Q |
692 |
gaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaacctaactcctaaatcaaagcatatccatcacatgca |
791 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
34795634 |
gaggaagtagaaaacacacccagatgtaaatagcagatgaagcaagttattcttaaatcccaaacccaactcctaaatcaaagcatatccatcacatgca |
34795733 |
T |
|
| Q |
792 |
cacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttctatacagtaaacacaacaatt |
879 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34795734 |
cacgtacaaactcatcccatttataatctcattcgcaaccgttctgttttgtgttttgttccatttctatacagtaaacacaacaatt |
34795821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 27 - 131
Target Start/End: Complemental strand, 16911469 - 16911365
Alignment:
| Q |
27 |
aaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagcatgg |
126 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||||| ||| | ||||||||| ||||||||||||| |||||||||||||| || ||| |||||||||| |
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|
| T |
16911469 |
aaagaaatgatacccaatgcaacaaacaaggatgattattcaagcaactatatccaatgatttagccattgtccaatgcttcgatagagaaaaagcatgg |
16911370 |
T |
|
| Q |
127 |
atgat |
131 |
Q |
| |
|
||||| |
|
|
| T |
16911369 |
atgat |
16911365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 16911333 - 16911266
Alignment:
| Q |
155 |
gagaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtgt |
222 |
Q |
| |
|
|||||||||| |||||| |||| ||||| |||||||| |||||||||||||| |||||| |||||| |
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|
| T |
16911333 |
gagaagagaagatgaaaatatgtatatgcactttataactagagtgaaaggaatgagaagaggcgtgt |
16911266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 22 - 132
Target Start/End: Original strand, 38303288 - 38303398
Alignment:
| Q |
22 |
tgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaag |
121 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
38303288 |
tgatgaaagaaatgatacataatgcaacagacaaggatgagtatgaaagcaattatacccaatgatttagctgttgtccaatgcttccatggaggaacaa |
38303387 |
T |
|
| Q |
122 |
catggatgatg |
132 |
Q |
| |
|
||| ||||||| |
|
|
| T |
38303388 |
catcgatgatg |
38303398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 24 - 130
Target Start/End: Complemental strand, 49677145 - 49677039
Alignment:
| Q |
24 |
atgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatgcttctatggaggaaaagca |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||| ||||||||| || ||||| |||||||| || || |||||| | |
|
|
| T |
49677145 |
atgaaagaaacgatacccaatgcaacgaacaatgataagtatgaaagcaattatacctaatgatttaactattgtctaatgcttccatagaagaaaagaa |
49677046 |
T |
|
| Q |
124 |
tggatga |
130 |
Q |
| |
|
| ||||| |
|
|
| T |
49677045 |
tcgatga |
49677039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 49677002 - 49676939
Alignment:
| Q |
158 |
aagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaagacgcgtg |
221 |
Q |
| |
|
||||||||||||||| |||| ||||| ||||||||||||||||||||||| |||||| ||||| |
|
|
| T |
49677002 |
aagagaaactgaaaaagtgtgtatgcaatttataaccagagtgaaaggaatgagaagaggcgtg |
49676939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 26154555 - 26154485
Alignment:
| Q |
245 |
caacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcattt |
315 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| |
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|
| T |
26154555 |
caacttaacgtttctaacgacagcggaggtttgggttatgtgacaaaatagagggggtgtctgtgtcattt |
26154485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 245 - 315
Target Start/End: Complemental strand, 26167853 - 26167783
Alignment:
| Q |
245 |
caacttaacttttctaacaacatgagaggtttgtgtcatgtgacaaaatagaggagatgtcagtgtcattt |
315 |
Q |
| |
|
||||||||| |||||||| ||| |||||||| || ||||||||||||||||| | |||| ||||||||| |
|
|
| T |
26167853 |
caacttaacgtttctaacgacagcggaggtttgggttatgtgacaaaatagagggggtgtctgtgtcattt |
26167783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 5 - 132
Target Start/End: Original strand, 30332696 - 30332822
Alignment:
| Q |
5 |
gcaaggatgagaagggatgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgttgtccaatg |
104 |
Q |
| |
|
||||||||||||| | ||||||||||||| ||| | |||||||| ||||| |||| |||| ||| ||||||||| | ||||| ||||||||||| ||||| |
|
|
| T |
30332696 |
gcaaggatgagaatg-atgatgaaagaaatgatgcacaatgcaatgaacagggataagtacgaaagcaactatatcgaatgaattagctgttgtgcaatg |
30332794 |
T |
|
| Q |
105 |
cttctatggaggaaaagcatggatgatg |
132 |
Q |
| |
|
|||| ||||||||||||||| ||||||| |
|
|
| T |
30332795 |
cttccatggaggaaaagcatcgatgatg |
30332822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 12140053 - 12139979
Alignment:
| Q |
21 |
atgatgaaagaaacgatacccaatgcaacgaacaaggatgagtatgaatgcaactatacccaatgatttagctgtt |
96 |
Q |
| |
|
||||||||| |||||||||| |||||||| |||||||||||||| || |||||||||| ||||| ||||| |||| |
|
|
| T |
12140053 |
atgatgaaaaaaacgatacc-aatgcaacaaacaaggatgagtacaaaagcaactatacacaatgctttagttgtt |
12139979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 215
Target Start/End: Original strand, 17364554 - 17364612
Alignment:
| Q |
157 |
gaagagaaactgaaaaggtgtacatgcagtttataaccagagtgaaaggaataagaaga |
215 |
Q |
| |
|
||||||||| |||||| || | ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
17364554 |
gaagagaaattgaaaatgtttgtatgcagtttataaccagagtgaaaggaatgagaaga |
17364612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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