View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_12 (Length: 405)
Name: NF3011_high_12
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 14 - 393
Target Start/End: Original strand, 9554852 - 9555231
Alignment:
| Q |
14 |
agagaaaaggaagaaaatgacatctctaatgaaactagctttatcaactgaaacattattggaactaactataaaacttattatgcctaaaacagctgtg |
113 |
Q |
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| T |
9554852 |
agagaaaaggaagaaaatgacatctctaatgaaactagctttatcaactgaaacattattggaactaactataaaacttattatgcctaaaacagctgtg |
9554951 |
T |
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| Q |
114 |
gaaacaaaaaatgcaccccccaaaatgctatttaaaccgaccgcgccattgtttgaacttgtgaaagaaacaacactagcaaagaaatcaggagcaccat |
213 |
Q |
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| T |
9554952 |
gaaacaaaaaatgcaccccccaaaatgctatttaaaccgaccgcgccattgtttgaacttgtgaaagaaacaacactagcaaagaaatcaggagcaccat |
9555051 |
T |
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| Q |
214 |
tacctagagagagtaatgttacaccagctatggttggagaaagtcttaagatgttagacaaaccttctagagatgtgcaaaagtaatttgaagctgtgtc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9555052 |
tacctagagagagtaatgttacaccagctatggttggagaaagtcttaagatgttagacaaaccttctagagatgtgcaaaagtaatttgaagctgtgtc |
9555151 |
T |
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| Q |
314 |
ggctaaaagatagaataaaactactagccataaaacaagtagtgtgtgaccaagaattggtgaatttccaaggttgcaat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9555152 |
ggctaaaagatagaataaaactactagccataaaacaagtagtgtgtgaccaagaattggtgaatttccaaggttgcaat |
9555231 |
T |
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