View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_high_15 (Length: 381)

Name: NF3011_high_15
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_high_15
NF3011_high_15
[»] chr3 (4 HSPs)
chr3 (29-352)||(50301704-50302045)
chr3 (142-215)||(10773485-10773558)
chr3 (142-215)||(32862071-32862144)
chr3 (142-215)||(4317467-4317540)
[»] chr4 (7 HSPs)
chr4 (142-215)||(39264737-39264810)
chr4 (142-215)||(2737723-2737796)
chr4 (142-215)||(48997058-48997131)
chr4 (143-215)||(38372657-38372729)
chr4 (142-215)||(16041378-16041451)
chr4 (142-251)||(45065544-45065654)
chr4 (142-215)||(12391334-12391407)
[»] chr1 (2 HSPs)
chr1 (145-215)||(3324902-3324972)
chr1 (142-215)||(48315108-48315181)
[»] chr2 (6 HSPs)
chr2 (9-102)||(23757861-23757951)
chr2 (142-215)||(23757712-23757785)
chr2 (9-66)||(33522523-33522580)
chr2 (168-226)||(12197420-12197478)
chr2 (145-190)||(33522370-33522415)
chr2 (104-138)||(23757801-23757835)
[»] chr6 (1 HSPs)
chr6 (135-259)||(23112034-23112164)
[»] chr5 (2 HSPs)
chr5 (142-224)||(37344574-37344656)
chr5 (37-103)||(37344692-37344757)
[»] chr8 (4 HSPs)
chr8 (9-66)||(42476361-42476418)
chr8 (145-215)||(28733228-28733298)
chr8 (147-190)||(42476528-42476571)
chr8 (143-215)||(10227238-10227309)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 29 - 352
Target Start/End: Complemental strand, 50302045 - 50301704
Alignment:
Q  29 ggatcgaaattgaaatgaaattagggtttagaaaagggnnnnnnnnn---gtgtgaaaatgaatttttgtgtgagaaaatgtaatggttcagtttagtta 125  Q
    |||| |||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  50302045 ggatagaaattgaaatgaaattagggtttagaaaagggttttttttttttgtgtgaaaatgaatttttgtgtgagaaaatgtaatggttcggtttagtta 50301946  T
Q  126 attaagtttggttcgattcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgattt 225  Q
    ||||||||||||||| || ||||||||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||| ||||||||| ||| |||||    
T  50301945 attaagtttggttcggtttggttcagttaatgaactgtttttaaaataatggttcggatcaataaccaatgtaatggttcagttaattttagtttgattt 50301846  T
Q  226 -----gtttagtttttgaatatttttgcccacctctaaacggaagtgactaagttgtggaatataacaaagatgaact---------caaac-gatcgaa 310  Q
         || || |||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||         ||||| ||| |||    
T  50301845 tgttcgtctacttttaggatatttttgcccacctctaaacggaagtgactaagttgtggagtataacaaagatgaacttaacatacacaaacggattgaa 50301746  T
Q  311 aattgatcatgagagtaaaataataccaacaatagttaagag 352  Q
    ||||||| ||||||||||||| |||| |||||||||||||||    
T  50301745 aattgattatgagagtaaaatgatacaaacaatagttaagag 50301704  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 10773558 - 10773485
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||||||||||||||  |  ||||||||||||||||||| | ||||||||||||  |||||||| |||||||||    
T  10773558 ttcggttcagttaattgaccgtttttaaaataacggttcggttcaataatcaataaaatggttcagttaatttt 10773485  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 32862144 - 32862071
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    ||||||||||||| ||||||||||||||||||||||||  | |||||||  |||| |||| ||| |||||||||    
T  32862144 ttcggttcagttagtgaattgtttttaaaataacggtttggttcaataaataatgcaatgattcagttaatttt 32862071  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 4317467 - 4317540
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||| ||||||||||||| ||| || |||||| |||||||| ||||||  || | ||| |||||||||||||||    
T  4317467 ttcgattcagttaatgaactgtcttcaaaatagcggttcagttcaatatccactataaaggttcggttaatttt 4317540  T

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Target: chr4 (Bit Score: 58; Significance: 3e-24; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 39264810 - 39264737
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||||||||||||||||| |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  39264810 ttcggttcagttaatgaactgtttttaaaataatggttcagttcaataaccaatgtaatggttcggttaatttt 39264737  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 2737723 - 2737796
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    ||||||||||||||||| ||||||||||||||||||||| | ||||||| |||||||||||||| |||||||||    
T  2737723 ttcggttcagttaatgatttgtttttaaaataacggttcggttcaataaccaatgtaatggttcagttaatttt 2737796  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 48997058 - 48997131
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||| ||||||||||||| |||||||||||||||||||  | | ||||| ||||||| ||||||||||||||||    
T  48997058 ttcgattcagttaatgaactgtttttaaaataacggtttggtttaataaccaatgtagtggttcggttaatttt 48997131  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 38372657 - 38372729
Alignment:
Q  143 tcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    ||||||||||||||||| ||||||||||||||| |||| | ||||||| ||||| ||| |||| |||||||||    
T  38372657 tcggttcagttaatgaactgtttttaaaataactgttcggttcaataaccaatgcaatagttcagttaatttt 38372729  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 16041451 - 16041378
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||||||||||||||||| ||| || |||||| |||||||| ||||||  |||| ||| |||||||||||||||    
T  16041451 ttcggttcagttaatgaactgtcttcaaaatagcggttcagttcaatatccaatataaaggttcggttaatttt 16041378  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 45065654 - 45065544
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgatt-tgtttagtttttgaat 240  Q
    |||| ||||||||||||| ||||||||||||||||  ||   ||||||| |||||||||| ||| | ||||||| ||| | ||  |||  ||||||| ||    
T  45065654 ttcgattcagttaatgaactgtttttaaaataacgactcgattcaataaccaatgtaatgattcagctaattttagtttggttcggttcggtttttggat 45065555  T
Q  241 atttttgccca 251  Q
    |||||||||||    
T  45065554 atttttgccca 45065544  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 12391334 - 12391407
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||||||| ||||||||| || | | |||||| |||||||| ||||||  |||| ||| |||||||||||||||    
T  12391334 ttcggttcggttaatgaactggtctcaaaatagcggttcagttcaatatccaatataaaggttcggttaatttt 12391407  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 145 - 215
Target Start/End: Original strand, 3324902 - 3324972
Alignment:
Q  145 ggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||| |||||||||    
T  3324902 ggttcagttaatgaattgtttttaaaataacggttcggtttaataaccaatgtaatggttcagttaatttt 3324972  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 142 - 215
Target Start/End: Original strand, 48315108 - 48315181
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    |||||||||||||||||| ||||||||||||||| ||||   | |||||||||||||||||||| |||||||||    
T  48315108 ttcggttcagttaatgaactgtttttaaaataactgttcgatttaataatcaatgtaatggttcagttaatttt 48315181  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 9 - 102
Target Start/End: Complemental strand, 23757951 - 23757861
Alignment:
Q  9 cagagaagaagagttggattggatcgaaattgaaatgaaattagggtttagaaaagggnnnnnnnnngtgtgaaaatgaatttttgtgtgagaa 102  Q
    ||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||    
T  23757951 cagagaagaagaggtggattagattgaaattgaaatgaaattagggtttagaaaaggg---ttttttgtgtgaaaatgaatttttgtgtgagaa 23757861  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 23757785 - 23757712
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    ||||||||||||||| ||||||| |||||||||||| || | ||||||| ||||||||||||||  ||||||||    
T  23757785 ttcggttcagttaataaattgttcttaaaataacggatcggttcaataaccaatgtaatggttcaattaatttt 23757712  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 33522580 - 33522523
Alignment:
Q  9 cagagaagaagagttggattggatcgaaattgaaatgaaattagggtttagaaaaggg 66  Q
    ||||||||||||| || ||||||| ||||||||||||||| |||||||||||||||||    
T  33522580 cagagaagaagaggtgaattggattgaaattgaaatgaaagtagggtttagaaaaggg 33522523  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 12197478 - 12197420
Alignment:
Q  168 aaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgatttg 226  Q
    ||||||||||||| | ||||||| || ||||||||||||||||||||||||||| ||||    
T  12197478 aaaataacggttcggttcaataaccagtgtaatggttcggttaattttggttcggtttg 12197420  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 145 - 190
Target Start/End: Complemental strand, 33522415 - 33522370
Alignment:
Q  145 ggttcagttaatgaattgtttttaaaataacggttcagatcaataa 190  Q
    |||| ||||| ||||||||||||||||||||||||||| |||||||    
T  33522415 ggtttagttagtgaattgtttttaaaataacggttcagttcaataa 33522370  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 138
Target Start/End: Complemental strand, 23757835 - 23757801
Alignment:
Q  104 atgtaatggttcagtttagttaattaagtttggtt 138  Q
    |||||||||||| ||||||||||||||||||||||    
T  23757835 atgtaatggttcggtttagttaattaagtttggtt 23757801  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 135 - 259
Target Start/End: Original strand, 23112034 - 23112164
Alignment:
Q  135 ggttcgattcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaat-----tttggttcgatt-tgtt 228  Q
    |||||| ||||||||| |||||||| |||||||||||||||||||| | ||||||| || ||||||||||   |||||     ||||||||| ||  |||    
T  23112034 ggttcggttcggttcaattaatgaactgtttttaaaataacggttcggttcaataaccactgtaatggtttaattaattttcgtttggttcggttcggtt 23112133  T
Q  229 tagtttttgaatatttttgcccacctctaaa 259  Q
     |||||||| |||||||||||||||||||||    
T  23112134 cagtttttggatatttttgcccacctctaaa 23112164  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 37344656 - 37344574
Alignment:
Q  142 ttcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaattttggttcgatt 224  Q
    |||||||| ||||||||| |||||||||||||||||||| | ||||||| |||||||||| ||| ||||||||| ||| ||||    
T  37344656 ttcggttcggttaatgaactgtttttaaaataacggttcggttcaataaccaatgtaatgattcagttaattttagtttgatt 37344574  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 37344757 - 37344692
Alignment:
Q  37 attgaaatgaaattagggtttagaaaagggnnnnnnnnngtgtgaaaatgaatttttgtgtgagaaa 103  Q
    ||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  37344757 attgaaatgaaattagggtttagaaaaggg-ttctttttgtgtgaaaatgaatttttgtgtgagaaa 37344692  T

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Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 9 - 66
Target Start/End: Original strand, 42476361 - 42476418
Alignment:
Q  9 cagagaagaagagttggattggatcgaaattgaaatgaaattagggtttagaaaaggg 66  Q
    ||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||    
T  42476361 cagagaagaagaggtgaattggattgaaattgaaatgaaattagggtttagaaaaggg 42476418  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 28733298 - 28733228
Alignment:
Q  145 ggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    ||||||||||||||| |||||||||||||||||||| | | ||||| |||||||||| ||| |||||||||    
T  28733298 ggttcagttaatgaactgtttttaaaataacggttctgtttaataaccaatgtaatgattcagttaatttt 28733228  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 42476528 - 42476571
Alignment:
Q  147 ttcagttaatgaattgtttttaaaataacggttcagatcaataa 190  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  42476528 ttcagttagtgaattgtttttaaaataacggttcagttcaataa 42476571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 10227238 - 10227309
Alignment:
Q  143 tcggttcagttaatgaattgtttttaaaataacggttcagatcaataatcaatgtaatggttcggttaatttt 215  Q
    ||||| ||||| ||||| | ||||||||| |||||||| | ||||||| |||||||||||||| |||||||||    
T  10227238 tcggtacagttgatgaactttttttaaaa-aacggttcggttcaataaccaatgtaatggttcagttaatttt 10227309  T

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