View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_17 (Length: 374)
Name: NF3011_high_17
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 4973148 - 4973492
Alignment:
| Q |
16 |
agagacagcttgtgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973148 |
agagacagcttgtgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtt |
4973247 |
T |
|
| Q |
116 |
tctggtctgattaatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4973248 |
tctggtctgattaatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaag |
4973347 |
T |
|
| Q |
216 |
atgattgcatttaacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattgcatcattgtcccgcattaaccataagaattttgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
4973348 |
atgattgcatttaacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattgcgtcattgtcccgcattaaccataagaactttgtt |
4973447 |
T |
|
| Q |
316 |
aatctaattggatactgtgaggaagaagaaccattcacaatgatg |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4973448 |
aatctaattggatactgtgaggaagaagaaccattcacaaggatg |
4973492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 4991056 - 4991400
Alignment:
| Q |
16 |
agagacagcttgtgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991056 |
agagacagcttgtgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgtt |
4991155 |
T |
|
| Q |
116 |
tctggtctgattaatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4991156 |
tctggtctgattaatactagacaggaatggactaagaccatggaattgaactacaggagaaaggttttcctattgtcctcttaaattcaatagaaagaag |
4991255 |
T |
|
| Q |
216 |
atgattgcatttaacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattgcatcattgtcccgcattaaccataagaattttgtt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
4991256 |
atgattgcatttaacaatcccaaacttctcttttgctaatctagtttcgtgtatgctacagattgcgtcattgtcccgcattaaccataagaactttgtt |
4991355 |
T |
|
| Q |
316 |
aatctaattggatactgtgaggaagaagaaccattcacaatgatg |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4991356 |
aatctaattggatactgtgaggaagaagaaccattcacaaggatg |
4991400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 35832552 - 35832451
Alignment:
| Q |
17 |
gagacagcttgtgaggatttcagcaatattgttaccaatgttgaagcatgcactatatacaaaggaacactgtctagtggagtcgagattgcagttgttt |
116 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||| || | ||||| |||||| ||||| |||||||||||||| |||||||| |||||||| |||| || |
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| T |
35832552 |
gagacagcctgtgaagatttcagcaatatcattaacagttttgaaaaatgcaccatatataaaggaacactgtccagtggagttgagattgctgttgatt |
35832453 |
T |
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| Q |
117 |
ct |
118 |
Q |
| |
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|| |
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|
| T |
35832452 |
ct |
35832451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 35832291 - 35832200
Alignment:
| Q |
272 |
tacagattgcatcattgtcccgcattaaccataagaattttgttaatctaattggatactgtgaggaagaagaaccattcacaatgatgatg |
363 |
Q |
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|||||||||| || ||||||| ||||||||||||| ||| ||||| ||||| |||||||| ||||||||||||||||||| ||||||| |
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| T |
35832291 |
tacagattgcttctctgtcccgtgttaaccataagaactttaccaatcttattggttactgtgacgaagaagaaccattcacaaggatgatg |
35832200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 99
Target Start/End: Original strand, 41619836 - 41619878
Alignment:
| Q |
57 |
ttgaagcatgcactatatacaaaggaacactgtctagtggagt |
99 |
Q |
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||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
41619836 |
ttgaagcatgcaccatatacaaaggaacactgtccagtggagt |
41619878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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