View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_high_23 (Length: 331)

Name: NF3011_high_23
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_high_23
NF3011_high_23
[»] chr3 (9 HSPs)
chr3 (1-318)||(50301962-50302274)
chr3 (131-220)||(6935166-6935258)
chr3 (246-315)||(6531305-6531374)
chr3 (167-220)||(6525439-6525492)
chr3 (167-220)||(6799225-6799278)
chr3 (278-315)||(6941120-6941157)
chr3 (278-315)||(6944340-6944377)
chr3 (167-220)||(6410639-6410692)
chr3 (270-318)||(6799341-6799389)
[»] chr2 (2 HSPs)
chr2 (8-114)||(23757861-23757964)
chr2 (41-114)||(33522520-33522593)
[»] chr8 (1 HSPs)
chr8 (41-114)||(42476348-42476421)
[»] chr5 (1 HSPs)
chr5 (7-73)||(37344692-37344757)


Alignment Details
Target: chr3 (Bit Score: 238; Significance: 1e-132; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 50301962 - 50302274
Alignment:
Q  1 ttacattttctcccacaaaaattcctttccacacaaaataaaa---cccttttctataccctaatttcatttcaatttcgacccaatccaactcttcttt 97  Q
    |||||||||||| ||||||||||| ||| ||||||||| ||||   |||||||||| |||||||||||||||||||||| | ||        |||||||     
T  50301962 ttacattttctcacacaaaaattcattttcacacaaaaaaaaaaaacccttttctaaaccctaatttcatttcaatttctatcc--------tcttcttc 50302053  T
Q  98 tctgattctcactcaattaacaagggtaattttggtaaattactccctttgtgcatgtttgggttccgtgtgaatttgattgaattgtggcaattttgtc 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50302054 tctgattctcactcaattaacaagggtaattttggtaaattactccctttgtgcatgtttgggttccgtgtgaatttgattgaattgtggcaattttgtc 50302153  T
Q  198 aaaatttatatttttgaacttcagagttgtcatcaatagcattgtattgaggattgatcaactaattcagagttgtcatgttcccttatttttgtatgtg 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  50302154 aaaatttatatttttgaacttcagagttgtcatcaatagcattgtattgaggattgatcaactaattcacagttgtcatgttcccttatttttgtatgtg 50302253  T
Q  298 tttttcttcccaccttttgat 318  Q
    |||||||||||| ||||||||    
T  50302254 tttttcttcccagcttttgat 50302274  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 131 - 220
Target Start/End: Complemental strand, 6935258 - 6935166
Alignment:
Q  131 ggtaaattactccctttgtgcatgtt---tgggttccgtgtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 220  Q
    ||||||| ||||||| ||||||||||   ||| ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  6935258 ggtaaatcactccctatgtgcatgttgtttggattccgggtgaatttgatagaattgtggcaattttgtccaaatttatatttttgaacttca 6935166  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 6531305 - 6531374
Alignment:
Q  246 gaggattgatcaactaattcagagttgtcatgttcccttatttttgtatgtgtttttcttcccacctttt 315  Q
    |||||||||| || | ||||| |  |||||| ||||||||||||||||||||||||||||||||||||||    
T  6531305 gaggattgattaatttattcataactgtcatcttcccttatttttgtatgtgtttttcttcccacctttt 6531374  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 6525439 - 6525492
Alignment:
Q  167 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 220  Q
    ||||||||||| |||| |||| ||||||||||||||||||| ||||||||||||    
T  6525439 gtgaatttgatagaatcgtggtaattttgtcaaaatttatacttttgaacttca 6525492  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 6799225 - 6799278
Alignment:
Q  167 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 220  Q
    ||||||||||| ||||||||| |||||||||||||||| || ||||||||||||    
T  6799225 gtgaatttgatagaattgtggtaattttgtcaaaatttgtacttttgaacttca 6799278  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 6941157 - 6941120
Alignment:
Q  278 ttcccttatttttgtatgtgtttttcttcccacctttt 315  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6941157 ttcccttatttttgtatgtgtttttcttcccacctttt 6941120  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 278 - 315
Target Start/End: Complemental strand, 6944377 - 6944340
Alignment:
Q  278 ttcccttatttttgtatgtgtttttcttcccacctttt 315  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6944377 ttcccttatttttgtatgtgtttttcttcccacctttt 6944340  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 167 - 220
Target Start/End: Original strand, 6410639 - 6410692
Alignment:
Q  167 gtgaatttgattgaattgtggcaattttgtcaaaatttatatttttgaacttca 220  Q
    ||||||||||| ||||||||  ||||||||||||||||||| ||||||| ||||    
T  6410639 gtgaatttgatagaattgtgataattttgtcaaaatttatacttttgaatttca 6410692  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 270 - 318
Target Start/End: Original strand, 6799341 - 6799389
Alignment:
Q  270 ttgtcatgttcccttatttttgtatgtgtttttcttcccaccttttgat 318  Q
    ||||||| |||| |||||||||||||||||| ||||||||  |||||||    
T  6799341 ttgtcatattccgttatttttgtatgtgtttctcttcccatattttgat 6799389  T

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Target: chr2 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 23757861 - 23757964
Alignment:
Q  8 ttctcccacaaaaattcctttccacacaaaataaaacccttttctataccctaatttcatttcaatttcgacccaatccaactcttcttttctgattctc 107  Q
    ||||| ||||||||||| ||| |||||||||   |||||||||||| |||||||||||||||||||||| | | |||||| |||||||| ||||||||||    
T  23757861 ttctcacacaaaaattcattttcacacaaaa---aacccttttctaaaccctaatttcatttcaatttcaatctaatccacctcttcttctctgattctc 23757957  T
Q  108 actcaat 114  Q
    |||||||    
T  23757958 actcaat 23757964  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 33522520 - 33522593
Alignment:
Q  41 aaacccttttctataccctaatttcatttcaatttcgacccaatccaactcttcttttctgattctcactcaat 114  Q
    ||||||||||||| |||||| ||||||||||||||| | ||||| || |||||||| |||||||||||||||||    
T  33522520 aaacccttttctaaaccctactttcatttcaatttcaatccaattcacctcttcttctctgattctcactcaat 33522593  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 42476421 - 42476348
Alignment:
Q  41 aaacccttttctataccctaatttcatttcaatttcgacccaatccaactcttcttttctgattctcactcaat 114  Q
    ||||||||||||| |||||||||||||||||||||| | ||||| || |||||||| |||||||||||||||||    
T  42476421 aaacccttttctaaaccctaatttcatttcaatttcaatccaattcacctcttcttctctgattctcactcaat 42476348  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 37344692 - 37344757
Alignment:
Q  7 tttctcccacaaaaattcctttccacacaaaataaaacccttttctataccctaatttcatttcaat 73  Q
    |||||| ||||||||||| ||| ||||||||| | |||||||||||| |||||||||||||||||||    
T  37344692 tttctcacacaaaaattcattttcacacaaaa-agaacccttttctaaaccctaatttcatttcaat 37344757  T

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