View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_24 (Length: 325)
Name: NF3011_high_24
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_24 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 19388304 - 19388440
Alignment:
| Q |
1 |
tgatgtctcctctgagaaagtcaatcatctccttgataagtctcatccttgggctaaccgtattgagtttcatcagatgaatatcaagaacgattctcgt |
100 |
Q |
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| T |
19388304 |
tgatgtctcctctgagaaagtcaatcatctccttgataagtctcatccttgggctaaccgtattgagtttcatcagatgaatatcaagaacgattctcgt |
19388403 |
T |
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| Q |
101 |
cttgaaactcttgtcaaagcttctgatctcgtatata |
137 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
19388404 |
cttgaaactcttgtcaaagcttctgatctcgtatata |
19388440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 19388547 - 19388625
Alignment:
| Q |
244 |
gactattaatcttgctgcgatttgcacaccggcggattataacacgcggcctttggatactatttacagtaatttcatc |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19388547 |
gactattaatcttgctgcgatttgcacaccggcggattataacacgcggcctttggatactatttacagtaatttcatc |
19388625 |
T |
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