View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_26 (Length: 300)
Name: NF3011_high_26
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_26 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 21 - 285
Target Start/End: Original strand, 12454562 - 12454828
Alignment:
| Q |
21 |
atttaatatgtttttggaaagtttgaagaatagtatattcacatgtagcctcaataagaaatttgtttgaattgatattgtaattagagagtttcttttc |
120 |
Q |
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| T |
12454562 |
atttaatatgtttttggaaagtttgaagaatagtatattcacatgtagcctcaataagaaatttgtttgaattgatattgtaattagagagtttcttttc |
12454661 |
T |
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| Q |
121 |
ccacctggttcggattatattatccgaaatgttctagggcgcacgacaag--nnnnnnnntcccttgttgtaattattatgaagctgctgagttttatat |
218 |
Q |
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| T |
12454662 |
ccacctggttcggattatattatccgaaatgttctagggcgcatgacaagaaaaaaaaaatctcttgttgtaattattatgaagctgctgagttttatat |
12454761 |
T |
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| Q |
219 |
ttgtatctatgttgaaaattacaaatagtactgaaaattgagatgtaatttgtattaagtgtatcat |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |
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| T |
12454762 |
ttgtatctatgttgaaaattacaaatagtactgaaaattgaaaggtgatttgtattaagtgtatcat |
12454828 |
T |
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