View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_30 (Length: 261)
Name: NF3011_high_30
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 143 - 256
Target Start/End: Original strand, 21576087 - 21576200
Alignment:
| Q |
143 |
ccataatctcataaatatgctgaaataaacaaaaccctcaaaatgattcaatcaaaagatacaaactttatataaaatcaacgtatatgtatcagtcacc |
242 |
Q |
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| T |
21576087 |
ccataatctcataaatatgctgaaataaacaaaaccctcaaaatgattcaatcaaaagatacaaactttatataaaatcaacatatatgtatcagtcacc |
21576186 |
T |
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| Q |
243 |
acattgtgtctgtg |
256 |
Q |
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|||||||||||||| |
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| T |
21576187 |
acattgtgtctgtg |
21576200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 21575960 - 21576061
Alignment:
| Q |
2 |
ctaaaggagactgaacctgaaaaatcaccatttctcatcaccccaactctagaattcaataatctcaatccaaatggccacccttcttcctgaatcaacc |
101 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21575960 |
ctaaaggaaactgaacctgaaaaatcaccatttctcatcaccccaactctagaattcaataatctcaatccaaatggccacccttcttcctgaatcaacc |
21576059 |
T |
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| Q |
102 |
cc |
103 |
Q |
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|| |
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| T |
21576060 |
cc |
21576061 |
T |
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