View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_33 (Length: 251)
Name: NF3011_high_33
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 216
Target Start/End: Original strand, 20975881 - 20976087
Alignment:
| Q |
10 |
agaagaagtaaacaatcagaggaagcactgaatcaggaaataatgaagagnnnnnnnc-cacannnnnnnncttcttcgtggttgaaggatgcannnnnn |
108 |
Q |
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| T |
20975881 |
agaagaagtaaacaatcagaggaagcactgaatcaggaaataatgaagagaaaaaaaaacacattttttttcttctttgtggttgaaggatgcatttttt |
20975980 |
T |
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| Q |
109 |
nnaacaagtaattgaaggattataaataacagaagaagcaaagaataaattgatcatataactagggactaaaggatcaaaagtggaatattgaaatgat |
208 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20975981 |
t-aacaagtaattgaaggattctaaataacagaagaagcaaagaataaattgatcatataactagggactaaaggatcaaaagcggaatattgaaatgat |
20976079 |
T |
|
| Q |
209 |
gattgaag |
216 |
Q |
| |
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|||||||| |
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| T |
20976080 |
gattgaag |
20976087 |
T |
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