View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_39 (Length: 235)
Name: NF3011_high_39
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 28741902 - 28742121
Alignment:
| Q |
1 |
attcagtttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctgccaggtaggaacaagtttt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
28741902 |
attcagtttcatcacaatgaacgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctgccacgtaggaacaagtttt |
28742001 |
T |
|
| Q |
101 |
ccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcgacaccggtgtaactgcaccactgtcatggctttcgacgtcaccatgagcgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28742002 |
ccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcgacaccggtgtaactgcaccactgtcatggctttcgacgtcaccatgaacgg |
28742101 |
T |
|
| Q |
201 |
cacgtcgatggggttcagaa |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
28742102 |
cacgtcgatggggttcagaa |
28742121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 28750754 - 28750911
Alignment:
| Q |
8 |
ttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctgccaggtaggaacaagttttccttcaa |
107 |
Q |
| |
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|||||||| || || |||||||| |||||||||||||||||| | |||| |||||||||||| ||||| |||||||| ||||||||| | ||||||||| |
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| T |
28750754 |
ttcatcacgataaacgtgaacatcaccgacaacatgagactcgcaaatattgccctaacagtgacctgtttctgccacgtaggaacagatgttccttcaa |
28750853 |
T |
|
| Q |
108 |
accctttttcaatagaaaactcctccggttgatcatcgttcgacaccggtgtaactgc |
165 |
Q |
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| T |
28750854 |
accctttttccacagaaatctcctcgagttgttcatctttcaacaccggcgcaactgc |
28750911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39941031 - 39940907
Alignment:
| Q |
1 |
attcagtttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctgccaggtaggaacaagtttt |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || || | ||||| |||||||| || |||||||||||||||||| |||||||| | ||||||| |||| |
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| T |
39941031 |
attcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctaacagtaacctgtttctgccacgaaggaacagatttt |
39940932 |
T |
|
| Q |
101 |
ccttcaaaccctttttcaatagaaa |
125 |
Q |
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|||||||||||||||||||| |||| |
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| T |
39940931 |
ccttcaaaccctttttcaatggaaa |
39940907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 39956712 - 39956588
Alignment:
| Q |
1 |
attcagtttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctgccaggtaggaacaagtttt |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| || || | ||||| |||||||| || ||||||| | |||||||| |||||||| | ||||||| |||| |
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| T |
39956712 |
attcagcttcatcacaatgaaagtgaacatcactgatagcatgatactcacgactattgccctagccgtaacctgtttctgccacgaaggaacagatttt |
39956613 |
T |
|
| Q |
101 |
ccttcaaaccctttttcaatagaaa |
125 |
Q |
| |
|
|||||||||||||||||||| |||| |
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|
| T |
39956612 |
ccttcaaaccctttttcaatggaaa |
39956588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 7961190 - 7961337
Alignment:
| Q |
8 |
ttcatcacaatgaatgtgaacattaccgacaacatgagactcacgaataatgccctaacagtaacctgcttctgccaggtaggaacaagttttccttcaa |
107 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| | |||||||||||||| ||| |||| || || | | ||||| ||||||| ||||||||||| |
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| T |
7961190 |
ttcatcacgatgaatgtgaacattaccgtcaaaacgagactcacgaatatagccataaccgtgacattttggtgccacataggaactgattttccttcaa |
7961289 |
T |
|
| Q |
108 |
accctttttcaatagaaaactcctccggttgatcatcgttcgacaccg |
155 |
Q |
| |
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||||||||| |||||||| ||||||| | || |||||||||||||||| |
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| T |
7961290 |
acccttttttaatagaaacctcctcctgctgttcatcgttcgacaccg |
7961337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 7963706 - 7963863
Alignment:
| Q |
1 |
attcagtttcatcacaatgaatgtgaacattaccgac-aacatgagactcacgaataatgccctaacagtaacctgcttctgccaggtaggaa-caagtt |
98 |
Q |
| |
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|||||| ||||||| |||||||||||||| | |||| ||||||||||||||||||| | |||||| |||| | |||||||| |||||| | || |
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| T |
7963706 |
attcagattcatcatgatgaatgtgaacatcatcgaccaacatgagactcacgaatataggcctaaccataacatttttctgccatataggaattgattt |
7963805 |
T |
|
| Q |
99 |
ttccttcaaaccctttttcaatagaaaactcctccggttgatcatcgttcgacaccgg |
156 |
Q |
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||||||||||| ||||||| | | ||| |||||| ||| ||||||||||||||||| |
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| T |
7963806 |
ttccttcaaacactttttccacataaatctcctctaattgttcatcgttcgacaccgg |
7963863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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