View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_4 (Length: 585)
Name: NF3011_high_4
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_4 |
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| [»] chr5 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 573; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Original strand, 2489179 - 2489763
Alignment:
| Q |
1 |
taatctgtgtgtcctttgtctctgtatgtatcatcccgaataaagaaaaaagaggaaggagctgctgtgaaaccagaaggaaagactgaaagtcctgctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2489179 |
taatctgtgtgtcctttgtctctgtatgtatcatcccgaataaagaaaaaagaggaaggagctgctgtgaaaccagaaggaaagactgaaagtcctgcac |
2489278 |
T |
|
| Q |
101 |
ctgctgtaaagactgaagcagaaataccaacttcagtgcgcaaaactgatggtgaaaattcagttcctgcatccaaagctgtaagccttctctgttttct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489279 |
ctgctgtaaagactgaagcagaaataccaacttcagtgcgcaaaactgatggtgaaaattcagttcctgcatccaaagctgtaagccttctctgttttct |
2489378 |
T |
|
| Q |
201 |
aattattagatatattacaatttaattttaatagtgttgaaatcataccgcaagtggcctattcaaacacaacacaatctcttcacttgcaggaagttcc |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489379 |
aattgttagatatattacaatttaattttaatagtgttgaaatcataccgcaagtggcttattcaaacacaacacaatctcttcacttgcaggaagttcc |
2489478 |
T |
|
| Q |
301 |
tgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489479 |
tgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgccttagacgagactaaagat |
2489578 |
T |
|
| Q |
401 |
tcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2489579 |
tcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgctatttgggccacctg |
2489678 |
T |
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| Q |
501 |
gaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttc |
585 |
Q |
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| T |
2489679 |
gaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttc |
2489763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 282 - 585
Target Start/End: Complemental strand, 41591529 - 41591223
Alignment:
| Q |
282 |
ttcacttgcaggaagttcct---gataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattgg |
378 |
Q |
| |
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|||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| || ||||||||||| |||| || |||||||| || ||||| |
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| T |
41591529 |
ttcacttgcaggaagttcctcctgataatgaatttgagaagcgaataaggcctgaagttataccagcaaatgagattgatgtcacattctctgatattgg |
41591430 |
T |
|
| Q |
379 |
tgccttagacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagagga |
478 |
Q |
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||||||||| || || ||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||| || ||| | ||| |
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| T |
41591429 |
tgccttagaagaaacaaaagaatcacttcaagaactagtaatgcttcctcttcgaaggccagaccttttcactggaggacttctaaaaccatgtcgggga |
41591330 |
T |
|
| Q |
479 |
atattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctacca |
578 |
Q |
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||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||| |
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| T |
41591329 |
atattgctatttgggcctcctggaactgggaaaacaatgctggcgaaggccattgcaaaggaagctggagcaagtttcattaatgtgtccatgtctacca |
41591230 |
T |
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| Q |
579 |
tcacttc |
585 |
Q |
| |
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||||||| |
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| T |
41591229 |
tcacttc |
41591223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 286 - 585
Target Start/End: Complemental strand, 11094921 - 11094622
Alignment:
| Q |
286 |
cttgcaggaagttcctgataatgagtttgagaagcgaataagacctgaagtaatcccagcaaatgaaattggggtaacattctccgacattggtgcctta |
385 |
Q |
| |
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||||||||||||||| || || || || ||||||||||| ||||||||||| ||||| |||||||| || || || |||||| | || || ||||| ||| |
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| T |
11094921 |
cttgcaggaagttcccgacaacgaattcgagaagcgaattagacctgaagttatccctgcaaatgagataggtgttacattcgcagatatcggtgcatta |
11094822 |
T |
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| Q |
386 |
gacgagactaaagattcacttcaagaactagtaatgcttccccttcgaaggccagacctttttgaaggaggccttctaaagccttgtagaggaatattgc |
485 |
Q |
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|| |||| ||||| || |||||||| |||||||||||||||||| |||| ||||||||||| |||| || ||||||||||| |||||||| ||||| | |
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| T |
11094821 |
gatgagataaaagaatcgcttcaagagctagtaatgcttccccttagaagaccagaccttttcaaaggtggacttctaaagccatgtagaggtatattac |
11094722 |
T |
|
| Q |
486 |
tatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtctaccatcacttc |
585 |
Q |
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| || || |||||||| || |||||||||||||| |||||||| ||||| || || || ||||||||||||||||| || || ||||| || |||||||| |
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| T |
11094721 |
ttttcggtccacctggtaccggaaaaacaatgctagcaaaggcgattgcgaatgaagcaggagcaagtttcattaacgtctcgatgtccacgatcacttc |
11094622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 476 - 585
Target Start/End: Complemental strand, 39697136 - 39697027
Alignment:
| Q |
476 |
ggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcattaatgtatccatgtcta |
575 |
Q |
| |
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||||||||||| ||||| || ||||| || |||||||||||||| |||||||| | |||| ||| |||||||||| ||||||||| | |||||||||| |
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| T |
39697136 |
ggaatattgctttttggcccccctggcacgggaaaaacaatgcttgcaaaggcggtagcaaccgaagctggagcaaatttcattaacatctccatgtcta |
39697037 |
T |
|
| Q |
576 |
ccatcacttc |
585 |
Q |
| |
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||| ||||| |
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| T |
39697036 |
gcattacttc |
39697027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 564
Target Start/End: Original strand, 44926625 - 44926730
Alignment:
| Q |
459 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
558 |
Q |
| |
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|||| ||||| |||| ||| |||| || ||||| || ||||| |||||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |
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| T |
44926625 |
ttctgaagccatgtaaaggtgtattactttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgcaaatgaagctggagcaagtttcat |
44926724 |
T |
|
| Q |
559 |
taatgt |
564 |
Q |
| |
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||||| |
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| T |
44926725 |
caatgt |
44926730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 459 - 564
Target Start/End: Original strand, 44935065 - 44935170
Alignment:
| Q |
459 |
ttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttcat |
558 |
Q |
| |
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|||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| || ||||| |||||||| || ||||||||||||||||| |
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| T |
44935065 |
ttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgcttgccaaggcaattgcaaatgaagctggagcaagtttcat |
44935164 |
T |
|
| Q |
559 |
taatgt |
564 |
Q |
| |
|
||||| |
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|
| T |
44935165 |
caatgt |
44935170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 458 - 564
Target Start/End: Original strand, 45988450 - 45988556
Alignment:
| Q |
458 |
cttctaaagccttgtagaggaatattgctatttgggccacctggaacaggaaaaacaatgctggcaaaggccattgcaaacgaggctggagcaagtttca |
557 |
Q |
| |
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||||| ||||| |||| ||| ||||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| || || ||||||||||||||| |
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| T |
45988450 |
cttctgaagccatgtaaaggtgtattgctttttggacctcctggtacaggaaagacaatgctcgcaaaggcaattgctaatgaatctggagcaagtttca |
45988549 |
T |
|
| Q |
558 |
ttaatgt |
564 |
Q |
| |
|
| ||||| |
|
|
| T |
45988550 |
tcaatgt |
45988556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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