View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_41 (Length: 231)
Name: NF3011_high_41
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44924230 - 44924010
Alignment:
| Q |
1 |
gttagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaattaaggttggttttgaattatctgttattgttttcgtttcatcc |
100 |
Q |
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| T |
44924230 |
gttagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaattaaggttggttttgaattatctgttattgttttcttttcatcc |
44924131 |
T |
|
| Q |
101 |
tcctgataaaaacaactgtttgtgtattgtttattctagtatcctgggactgttggtagaaactcaaatccggctcaagttccttccttaatataaaaat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44924130 |
tcctgataaaaacaactgtttgtgtgttgtttattctagtatcctgggactgttggtagaaactcaaatccggcacaagttccttccttaatataaaaat |
44924031 |
T |
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| Q |
201 |
attagttcaatcaaatctgtg |
221 |
Q |
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||||||||||||||||||||| |
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| T |
44924030 |
attagttcaatcaaatctgtg |
44924010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Original strand, 29515060 - 29515124
Alignment:
| Q |
67 |
ttttgaattatctgttattgttttcgtttcatcctcctgataaaaacaactgtttgtgtattgtt |
131 |
Q |
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|||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||||| ||||| |
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| T |
29515060 |
ttttgaattacttgttgctgtattcttttcatcctcctgataaaaacaactgtttgtgtgttgtt |
29515124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29514928 - 29514984
Alignment:
| Q |
1 |
gttagttggatgatatagtctgtgatttgtactcctcctgacattttaatcacaaat |
57 |
Q |
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|||||||| |||||||||| |||||||||||| || | ||||||||||| ||||||| |
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| T |
29514928 |
gttagttgaatgatatagtttgtgatttgtacaccacttgacattttaaacacaaat |
29514984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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