View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_5 (Length: 528)
Name: NF3011_high_5
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 3530651 - 3531161
Alignment:
| Q |
1 |
cgtttgaggaaaaagaaaaagaatttgttcctgattcagatgaaacccagatcataaaaaagagatctttatcaccttctggtctatgtgctcagataga |
100 |
Q |
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| T |
3530651 |
cgtttgaggaaaaagaaaaagaatttgttcctgatttggatgaaacccagatcataaaaaagagatctttatcaccttctggtctatgtgctcagataga |
3530750 |
T |
|
| Q |
101 |
gaaattggttttgtgtaataagtttatggaggcaatggaattgtttgaaatgttggagcttgaaaatgctgaatcttatgttggtgctagtacttatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530751 |
gaaattggttttgtgtaataagtttatggaggcaatggaattgtttgaaatgttggagcttgaaaatgctgaatcttatgttggtgctagtacttatgat |
3530850 |
T |
|
| Q |
201 |
gctttgataagtgcttgtattcgtttgagatccattataggtgttaaaagggtgtttaattatatgaaaaatagtgggtttgagcttgatttgtatatga |
300 |
Q |
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| T |
3530851 |
gctttgataagtgcttgtattcgtttgagatccattataggtgttaaaagggtgtttaattatatgaaaaatagtgggtttgagcttgatttgtatatga |
3530950 |
T |
|
| Q |
301 |
tgaatcgggttttgtttatgcatgtacaatgtaatcttatgcgcgatgcacgtacgtggtttgatgatatgccggagagagattctagttcttggatgac |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3530951 |
tgaatcgggttttgtttatgcatgtacaatgtaatcttatgcgcgatgcgcgtacgtggtttgatgatatgccggagagagattctagttcttggatgac |
3531050 |
T |
|
| Q |
401 |
aatgattggtgggcttgtggattcgaggaattactctgaggcttttgagttgtttttgtgtatgtgggaagagtttaataatgggaagtctcgtactttc |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3531051 |
aatgattggtgggcttgtggattcgaggaattactctgaggcttttgagttgtttttgtgtatgtgggaagagtttaataatgggaagtctcgtactttc |
3531150 |
T |
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| Q |
501 |
gcggccatggt |
511 |
Q |
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| T |
3531151 |
gcggccatggt |
3531161 |
T |
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