View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_high_7 (Length: 506)
Name: NF3011_high_7
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 191 - 496
Target Start/End: Complemental strand, 13503997 - 13503692
Alignment:
| Q |
191 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcattgtcttttgtgtaattaacc |
290 |
Q |
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| T |
13503997 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcacagtcttttgtgtaattaacc |
13503898 |
T |
|
| Q |
291 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
390 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13503897 |
tagtactaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
13503798 |
T |
|
| Q |
391 |
ggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgctgcttctcttggttcaatctttggtgcctctatcttct |
490 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13503797 |
ggtacggccccagctccaggaccaagcaagagtcatgctccaaaaccaagcaagagtgatgctgcttctcttggttcaatctttggtgcctctatcttct |
13503698 |
T |
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| Q |
491 |
cctttg |
496 |
Q |
| |
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|||||| |
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| T |
13503697 |
cctttg |
13503692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 32 - 131
Target Start/End: Complemental strand, 13504158 - 13504057
Alignment:
| Q |
32 |
tcaacacatattttcgtaattatagcggttcatgccccgtgtgaaaatcaatggaataacta--acgaccatataactataaggtaattatacattcttg |
129 |
Q |
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| T |
13504158 |
tcaacacatattttcgtaattatagcggttcatgtcccgtgtgaaaatcaatggaataactaacacgaccatataactataaggtaattatacattcttg |
13504059 |
T |
|
| Q |
130 |
tc |
131 |
Q |
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|| |
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| T |
13504058 |
tc |
13504057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 445 - 496
Target Start/End: Complemental strand, 1865592 - 1865541
Alignment:
| Q |
445 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctttg |
496 |
Q |
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| T |
1865592 |
agtgatgctgcttctcctggttcaatccttggtgtctctctcttctcctttg |
1865541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 390
Target Start/End: Complemental strand, 1865727 - 1865632
Alignment:
| Q |
295 |
actaaatacacaatggagatgaagaagattgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcaccatgatcat |
390 |
Q |
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| T |
1865727 |
actaagtacacaatgaagatgaagattgttgcttttgttgttgtcctcttagccgccataagctccgttatggcacgtgatcactaccatcatcat |
1865632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 494
Target Start/End: Complemental strand, 1861585 - 1861536
Alignment:
| Q |
445 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctt |
494 |
Q |
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|||||||||| |||| ||||||||||| |||||||| || |||||||||| |
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| T |
1861585 |
agtgatgctgtttcttttggttcaatccttggtgccactctcttctcctt |
1861536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 383
Target Start/End: Original strand, 52500988 - 52501048
Alignment:
| Q |
323 |
ttgcttttgttgttgttctctttgctgtcataagcaccgttctggctcatgatcatcacca |
383 |
Q |
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|||||||||||||||| ||||| ||| |||| || |||||||||| |||||||||||||| |
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| T |
52500988 |
ttgcttttgttgttgtcctcttagctaccatatgctccgttctggcacatgatcatcacca |
52501048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 496
Target Start/End: Original strand, 52501152 - 52501203
Alignment:
| Q |
445 |
agtgatgctgcttctcttggttcaatctttggtgcctctatcttctcctttg |
496 |
Q |
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|||||||||| || ||||||||||||| ||||||| ||| |||||||||||| |
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| T |
52501152 |
agtgatgctgtttatcttggttcaatccttggtgcatctctcttctcctttg |
52501203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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