View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_high_8 (Length: 464)

Name: NF3011_high_8
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_high_8
NF3011_high_8
[»] chr1 (19 HSPs)
chr1 (1-445)||(35218845-35219289)
chr1 (1-444)||(8638681-8639125)
chr1 (218-407)||(35224914-35225100)
chr1 (220-382)||(35295862-35296021)
chr1 (172-387)||(35270387-35270603)
chr1 (163-386)||(35476247-35476468)
chr1 (174-387)||(35262966-35263178)
chr1 (218-387)||(35190373-35190530)
chr1 (159-257)||(45531508-45531608)
chr1 (182-270)||(35147327-35147417)
chr1 (215-387)||(35199930-35200099)
chr1 (172-249)||(35248223-35248302)
chr1 (296-386)||(35212042-35212132)
chr1 (297-406)||(34309426-34309535)
chr1 (323-387)||(35276637-35276701)
chr1 (215-257)||(45525465-45525507)
chr1 (8-56)||(35475534-35475582)
chr1 (335-385)||(45525579-45525629)
chr1 (335-387)||(35147470-35147522)
[»] chr7 (1 HSPs)
chr7 (172-271)||(38631839-38631938)
[»] chr3 (2 HSPs)
chr3 (222-257)||(899884-899919)
chr3 (219-257)||(53924388-53924426)


Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Original strand, 35218845 - 35219289
Alignment:
Q  1 atttcaaaacaaaattggtaaccaagagccaagactgaaacagtacagaactgtcaaactcaatagatgttggtatttactctcaacatatttgtatatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35218845 atttcaaaacaaaattggtaaccaagagccaagactgaaacagtacagaactgtcaaactcaatagatgttggtatttactctcaacatatttgtatatt 35218944  T
Q  101 accatcaatcatcttgatggcaaagatctgtcaaattctatttgcttcttctagttatgcactattctgaaatccaagacacaagacccctgcatagttc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35218945 accatcaatcatcttgatggcaaagatctgtcaaattctatttgcttcttctagttatgcactattctgaaatccaagacacaagacccctgcatagttc 35219044  T
Q  201 agtgtatgttgtttattgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35219045 agtgtatgttgtttattgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactca 35219144  T
Q  301 tttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtttcagtctaaatac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35219145 tttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtttcagtctaaatac 35219244  T
Q  401 tttgttgtcttggctacctaatattctgttgagccgcttacattc 445  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  35219245 tttgttgtcttggctacctaatattctgttgagccgcttacattc 35219289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 8638681 - 8639125
Alignment:
Q  1 atttcaaaacaaaattggtaaccaagagccaagactgaaacagtacagaactgtcaaactcaatagatgttggtatttactctcaacatatttgtatatt 100  Q
    |||||||||||||||||||| |||||||| |  ||| ||||| || ||| |||||||| |||| |||||| |||||||| |||||||||||||||||||     
T  8638681 atttcaaaacaaaattggtacccaagagcaacaactaaaacaataaagagctgtcaaattcaagagatgtgggtatttattctcaacatatttgtatatg 8638780  T
Q  101 accatcaatcatcttgatggcaaagatctgtcaaattctatttgcttcttctagtt-atgcactattctgaaatccaagacacaagacccctgcatagtt 199  Q
     ||||||| |||||||||||||||||| ||||||| |  |||||||| |||||||| | ||||||||||   |||||||||||||||||||| |||||||    
T  8638781 gccatcaaacatcttgatggcaaagatttgtcaaacttcatttgcttgttctagtttaggcactattctaccatccaagacacaagacccctccatagtt 8638880  T
Q  200 cagtgtatgttgtttattgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactc 299  Q
     ||| ||| ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  8638881 tagtttatattgattattatcttccttgggcctaacttctattccttcaacaaagaaacctctcttccaagtataaccatcctttatcccagtaatactc 8638980  T
Q  300 atttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtttcagtctaaata 399  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||| |||||  ||| || |||||||     
T  8638981 atttggacttcttcatcttctaagcctgaattgaagaactctcccatctcagtctccaaccacccatcacttctcattctaggttgttgcaatctaaatg 8639080  T
Q  400 ctttgttgtcttggctacctaatattctgttgagccgcttacatt 444  Q
    |||||||||| || |||||||||||| |||||| |||| ||||||    
T  8639081 ctttgttgtcctgactacctaatattttgttgatccgcctacatt 8639125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 218 - 407
Target Start/End: Original strand, 35224914 - 35225100
Alignment:
Q  218 gtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactcatttggacttcttcatct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||| |||||||  || ||| ||||||||||||||||||||||    
T  35224914 gtcttccttaggcctaacttctattccttcaacaaagaaacctctcttcc---aatgaccaccctttatatcaataacactcatttggacttcttcatct 35225010  T
Q  318 ggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtttcagtctaaatactttgttg 407  Q
      || |||||||||||||||||||||||||||| | || |||||  |||| ||||||| | ||||||||| || ||| |||||| |||||    
T  35225011 tctaggcctgaaatgaagaactctcccatctcaatctctaaccagccatcgcttctcacattaggacgttgcaatcttaatactctgttg 35225100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 220 - 382
Target Start/End: Complemental strand, 35296021 - 35295862
Alignment:
Q  220 cttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactcatttggacttcttcatctgg 319  Q
    |||||||||||||||||||||||||||||| ||| |||||| ||||||  | |   ||| ||||| |  |  ||| ||||||||||||||||||||||      
T  35296021 cttccttaggcctaacttctattccttcaagaaataaacctgtcttcccctga---ccaccctttgtatccataacactcatttggacttcttcatctac 35295925  T
Q  320 taagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactagg 382  Q
    |||||||||| |||||||||||||||||||| | ||||||||| |||||||||||| ||||||    
T  35295924 taagcctgaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactagg 35295862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 172 - 387
Target Start/End: Original strand, 35270387 - 35270603
Alignment:
Q  172 atccaagacacaagacccct-gcatagttcagtgtatgttgttta-ttgtcttc--cttaggcctaacttctattccttcaacaaagaaacctctcttcc 267  Q
    ||||| ||| |||||||||| ||||||||||||| |||||| ||| |||| ||   |||||||||||||||||||||||||| ||  | |||||||||||    
T  35270387 atccacgacccaagaccccttgcatagttcagtgaatgttggttaattgtgttatacttaggcctaacttctattccttcaagaactagacctctcttcc 35270486  T
Q  268 aataataaccatcctttatcccagtaatactcatttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatc 367  Q
    ||| |   ||| ||||| ||    | | | |||| ||||||||||||| |  || ||||||| |||||||||| ||||||||| | ||||||||| ||||    
T  35270487 aatta---ccaccctttgtctgtatcacattcatctggacttcttcattttctatgcctgaattgaagaactcccccatctcaatctccaaccacccatc 35270583  T
Q  368 acttctcatactaggacgtt 387  Q
    |||||||| |||||||||||    
T  35270584 acttctcacactaggacgtt 35270603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 163 - 386
Target Start/End: Original strand, 35476247 - 35476468
Alignment:
Q  163 tattctgaaatccaagacacaagacccctgcatagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaacaaagaaacctc 261  Q
    |||||||  ||||||||| |||||||||| |||| ||||||| |||||| ||| |||||||||||||| ||||||||||||||||||| |||||||  ||    
T  35476247 tattctgtcatccaagacgcaagacccctacataattcagtgaatgttgcttaattgtcttccttaggtctaacttctattccttcaagaaagaaatttc 35476346  T
Q  262 tcttccaataataaccatcctttatcccagtaatactcatttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaacca 361  Q
     ||||    ||| ||||||   |||| || ||| ||| || ||||||||| || ||   | || | || | |||||||||||||||||| | ||||||||    
T  35476347 ccttcggcaaatcaccatc---tatctcaataacactaatgtggacttctacacctccgaggcataaattaaagaactctcccatctcaatctccaacca 35476443  T
Q  362 ctcatcacttctcatactaggacgt 386  Q
    | |||||| ||||| ||||||||||    
T  35476444 cccatcacgtctcacactaggacgt 35476468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 174 - 387
Target Start/End: Original strand, 35262966 - 35263178
Alignment:
Q  174 ccaagacacaagacccct-gcatagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaata 271  Q
    |||||||||||||||||| |||||||  |||  ||| || ||| |||| ||  |||||||||| |||||||||||||| ||||| ||| ||||||||||     
T  35262966 ccaagacacaagaccccttgcatagtatagtaaatgctgcttaattgtgttatttaggcctaatttctattccttcaagaaagagaccactcttccaatt 35263065  T
Q  272 ataaccatcctttatcccagtaatactcatttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcactt 371  Q
    |   ||| |||||||| |    | | |||| ||||||||||||| |  || ||||||| |||||||||| ||||||||| | ||||||||| |||| |||    
T  35263066 a---ccagcctttatctctaacaaattcatctggacttcttcattttctatgcctgaactgaagaactcccccatctcaatctccaaccacccatcgctt 35263162  T
Q  372 ctcatactaggacgtt 387  Q
    |||| |||||||||||    
T  35263163 ctcacactaggacgtt 35263178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 218 - 387
Target Start/End: Original strand, 35190373 - 35190530
Alignment:
Q  218 gtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactcatttggacttcttcatct 317  Q
    ||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||         || || |  ||| | ||||||||||||| || |||    
T  35190373 gtcttacttaggcctaacttctattccttcaagaaagagacctctcttccaattat---------ttgtctccttaacattcatttggacttcatcttct 35190463  T
Q  318 ggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 387  Q
     |   ||||||| ||||||||||||| |||||| | ||||||||| |||||||||||| |||||||||||    
T  35190464 ag---gcctgaattgaagaactctccgatctcaatctccaaccacccatcacttctcacactaggacgtt 35190530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 45531508 - 45531608
Alignment:
Q  159 gcactattctgaaatccaagacacaagacccctg-catagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaacaaagaa 256  Q
    ||||||||||   |||||||||||||||||| || ||||||||| || | |||| ||| |||||| ||||||||||||||||||||||||||| ||||||    
T  45531508 gcactattctaccatccaagacacaagacccatgacatagttcactgaaagttgcttaattgtctaccttaggcctaacttctattccttcaagaaagaa 45531607  T
Q  257 a 257  Q
    |    
T  45531608 a 45531608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 270
Target Start/End: Original strand, 35147327 - 35147417
Alignment:
Q  182 caagacccct-gcatagttcagtgtatgttgtttattg-tcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaat 270  Q
    |||||||||| ||||||||||  | |||||| ||| || |||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  35147327 caagaccccttgcatagttcatggaatgttgcttaatggtcttacttaggcctaacttctattccttcaacaaagagaccactcttccaat 35147417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 215 - 387
Target Start/End: Original strand, 35199930 - 35200099
Alignment:
Q  215 attgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaataataaccatcctttatcccagtaatactcatttggacttcttca 314  Q
    |||||||| ||||||||| |||||||||||||||| ||||| ||| |||||| ||| |||| ||||   | || |  | ||| ||||||| |||||||||    
T  35199930 attgtcttacttaggcctgacttctattccttcaagaaagagaccactcttcgaattataatcatc---tgtctcctttatattcatttgaacttcttca 35200026  T
Q  315 tctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 387  Q
    |||  |  ||||||| |||||||||| || || ||| | ||||||||| |||| ||||||| |||||| ||||    
T  35200027 tcttcttcgcctgaattgaagaactccccgatttcaatctccaaccacccatcgcttctcacactagggcgtt 35200099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 35248223 - 35248302
Alignment:
Q  172 atccaagacacaagacccct-gcatagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaa 249  Q
    |||||||||| ||||||||| ||||||||||||| |||||| ||| |||| || |||||| |||||||||||||||||||    
T  35248223 atccaagacataagaccccttgcatagttcagtgaatgttgcttaattgtattacttaggtctaacttctattccttcaa 35248302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 35212042 - 35212132
Alignment:
Q  296 actcatttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgt 386  Q
    ||||||||||| ||||||||||   | ||  ||| |||||||||||||||||||| | ||||||||| |||||||||||| ||| ||||||    
T  35212042 actcatttggatttcttcatcttcaaggctagaattgaagaactctcccatctcaatctccaaccacccatcacttctcacactcggacgt 35212132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 406
Target Start/End: Original strand, 34309426 - 34309535
Alignment:
Q  297 ctcatttggacttcttcatctggtaagcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtttcagtctaa 396  Q
    |||||||||| ||||||||||   | || |||| |||||||||||||||||||| | ||||||||  |||||||||| | | ||||||||| || ||  |    
T  34309426 ctcatttggatttcttcatcttcaaggcttgaattgaagaactctcccatctcaatctccaaccatccatcacttcttacattaggacgttgcaatccta 34309525  T
Q  397 atactttgtt 406  Q
    ||||||||||    
T  34309526 atactttgtt 34309535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 35276637 - 35276701
Alignment:
Q  323 gcctgaaatgaagaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 387  Q
    ||||||| |||||||||| ||||||||| | ||||||||| |||| ||||||| |||||||||||    
T  35276637 gcctgaattgaagaactcccccatctcaatctccaaccacccatctcttctcacactaggacgtt 35276701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 45525465 - 45525507
Alignment:
Q  215 attgtcttccttaggcctaacttctattccttcaacaaagaaa 257  Q
    ||||||| ||||||||||||||||||||||||||| |||||||    
T  45525465 attgtctaccttaggcctaacttctattccttcaagaaagaaa 45525507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 35475534 - 35475582
Alignment:
Q  8 aacaaaattggtaaccaagagccaagactgaaacagtacagaactgtca 56  Q
    ||||||||| |||||||||||||||||||||||| ||| ||| ||||||    
T  35475534 aacaaaattagtaaccaagagccaagactgaaacggtaaagatctgtca 35475582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 385
Target Start/End: Original strand, 45525579 - 45525629
Alignment:
Q  335 gaactctcccatctcagtttccaaccactcatcacttctcatactaggacg 385  Q
    |||||||||||||||| | ||||||||| |||||||||||| || ||||||    
T  45525579 gaactctcccatctcaatctccaaccacccatcacttctcacaccaggacg 45525629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 387
Target Start/End: Original strand, 35147470 - 35147522
Alignment:
Q  335 gaactctcccatctcagtttccaaccactcatcacttctcatactaggacgtt 387  Q
    |||||| ||||||||| | ||||||||| |||| ||||||| |||||||||||    
T  35147470 gaactcccccatctcaatctccaaccacccatcgcttctcacactaggacgtt 35147522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 271
Target Start/End: Original strand, 38631839 - 38631938
Alignment:
Q  172 atccaagacacaagacccct-gcatagttcagtgtatgttgttta-ttgtcttccttaggcctaacttctattccttcaacaaagaaacctctcttccaa 269  Q
    |||||||||||||||||||| ||||| ||||||  |||||| | | |||||||| || | ||||||||||||||||||||||||||| ||||||||| ||    
T  38631839 atccaagacacaagaccccttgcata-ttcagtcaatgttgctaaattgtcttcttt-gtcctaacttctattccttcaacaaagaagcctctcttcaaa 38631936  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 257
Target Start/End: Complemental strand, 899919 - 899884
Alignment:
Q  222 tccttaggcctaacttctattccttcaacaaagaaa 257  Q
    |||||||||||||||||||||||||||| |||||||    
T  899919 tccttaggcctaacttctattccttcaagaaagaaa 899884  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 257
Target Start/End: Complemental strand, 53924426 - 53924388
Alignment:
Q  219 tcttccttaggcctaacttctattccttcaacaaagaaa 257  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  53924426 tcttacttaggcctaacttctattccttcaagaaagaaa 53924388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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