View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_11 (Length: 418)
Name: NF3011_low_11
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 47 - 407
Target Start/End: Complemental strand, 10243860 - 10243496
Alignment:
| Q |
47 |
ccccaaatcagtttcacgttcatctgcacgtttactctctacaatggaatttaaacaggagttcttcataatacttttatatgcaattaaagaccatcac |
146 |
Q |
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| T |
10243860 |
ccccaaatcagtttcacattcatctgcacgtttactctctagaatggaatttaaacaagagttcttcataatacttttatattcaattaaagactatcac |
10243761 |
T |
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| Q |
147 |
aagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctactt----ag |
242 |
Q |
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| T |
10243760 |
aagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctacttagttag |
10243661 |
T |
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| Q |
243 |
ttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgatacacaaacttg |
342 |
Q |
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| T |
10243660 |
ttcatgattgaaaaggtagaactgccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgatacacaaacttg |
10243561 |
T |
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| Q |
343 |
tacaaatcattctgcacgcaattaacccataaacatgccattccaactatcaacatttctttcat |
407 |
Q |
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| T |
10243560 |
tacaaatcattctgcatgtaattaacccataaacatgccattccaactatcaacatttctttcat |
10243496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 51 - 308
Target Start/End: Complemental strand, 10225114 - 10224858
Alignment:
| Q |
51 |
aaatcagtttcacgttcatctgcacgtttactctctacaatggaatttaaacaggagttcttcataatacttttatatgcaattaaagaccatcacaagt |
150 |
Q |
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| T |
10225114 |
aaatcagattcacattcatctgcacgtttactctatataatggaatttaaactagagttcttcataatacttttatatgcaattaaagactatcacaagt |
10225015 |
T |
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| Q |
151 |
ttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac----ttagttca |
246 |
Q |
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| T |
10225014 |
ttgaaactgcaaagttatgtgtaaatt----tcagtatattttaaaagcttccattcagcatctttaacatgtgtatgtacaacctacttagttagttca |
10224919 |
T |
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| Q |
247 |
tgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtgg |
308 |
Q |
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| T |
10224918 |
tgcttgaaaagttagaactgccac-aagcaattcttagtttttcaagcagtggttcatgtgg |
10224858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 143 - 405
Target Start/End: Complemental strand, 10233281 - 10233019
Alignment:
| Q |
143 |
tcacaagtttgaaactacaaaagtatgtgtaaattattgtatatatattttaaaagtttccattcaacatatttaacatgtgtatgtacaacctac---- |
238 |
Q |
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| T |
10233281 |
tcacaactctgaaactacaaaagtatgtgtaatttttttt---tatattttaaaagcttccattaagtatctttaacatgtgtattttcaacctacgtac |
10233185 |
T |
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| Q |
239 |
----ttagttcatgattgaaaaggtagaaatgccacaaagcaattcttaatttttcaagtagtgattcatgtggtagcacttcagtttccatatgataca |
334 |
Q |
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| T |
10233184 |
ttagttagttcatggttgaaaaggtagaactaccacaa-gcaattcttaatttttcaagtagtgattcatgt-gtagcactccagctgccatatgatact |
10233087 |
T |
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| Q |
335 |
caaacttgtacaaatcattctgcacgcaattaacccataaacatgccattccaactatc-aacatttctttc |
405 |
Q |
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| T |
10233086 |
caaacttgtacaaaccattctgcatg----taacccatagacatggctttccaactatcaaacatttctttc |
10233019 |
T |
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