View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_16 (Length: 379)
Name: NF3011_low_16
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 4442224 - 4441848
Alignment:
| Q |
1 |
tctgatttatgtaatctatttaataaaaattggttaatttcgtattaagcgtcgattaaacaaaccttgttctgaattttgagaacttgtagcacaggac |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442224 |
tctgatttatgtaatctatttaataaaaattggttaatttcgtattaagcgtcaattaaacaaaccttgttctgaattttgagaacttgtagcacaggac |
4442125 |
T |
|
| Q |
101 |
atttttgaagcaaggaaagcagagaattggagttaaaccagggaagaatgagctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgagg |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4442124 |
atttttgaagcaaggaaagcagataattggagttaaaccagggaagaatgagctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgagg |
4442025 |
T |
|
| Q |
201 |
ttcaccaagcagccactgttcgtccacattatcaagtagcaattagtacaaaact--atatctatctataaagaaatcatgattagtaaagatataattt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| || |
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| T |
4442024 |
ttcaccaagcagccactgttcgtccacattatcaagtagcaattagtacaaaactatatatatatctataaagaaatcatgattagtagagatataactt |
4441925 |
T |
|
| Q |
299 |
ttcgttagttagttactaacttactctatataaatgatgaagcaaacttcaaataactaacataagaataatttacc |
375 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||| ||||||||| |
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|
| T |
4441924 |
ttcgttagttagttactaacttactctatatatatgataaagcaaacatcaaataactaacataagactaatttacc |
4441848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 44 - 268
Target Start/End: Complemental strand, 17478487 - 17478260
Alignment:
| Q |
44 |
attaagcgtcgattaaacaaaccttgt---tctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagagaattggagttaaacca |
140 |
Q |
| |
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||||||| ||||||| ||||||||||| |||||||| | |||||||| |||| |||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
17478487 |
attaagcttcgattatacaaaccttgtcgttctgaattataagaacttgcagcatcggacatttctgaagcaagctgagcagagaattggagttaaacca |
17478388 |
T |
|
| Q |
141 |
gggaagaatgagctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgtccacattatcaagtagc |
240 |
Q |
| |
|
| ||||||||||||||| | | | ||||||| ||||||||||||||| ||||| | |||||||||||||||||||||| || || | ||| || |
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| T |
17478387 |
gagaagaatgagctctagacgtatcaaatagtgaaattcttgaaaaagtagattgtggggttcaccaagcagccactgtttgtacaagacaccaactact |
17478288 |
T |
|
| Q |
241 |
aattagtacaaaactatatctatctata |
268 |
Q |
| |
|
||||||||||||| |||||||||||||| |
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|
| T |
17478287 |
aattagtacaaaaatatatctatctata |
17478260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 54 - 263
Target Start/End: Original strand, 32849189 - 32849402
Alignment:
| Q |
54 |
gattaaacaaaccttgttct---gaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagagaattggagttaaaccagggaagaatg |
150 |
Q |
| |
|
|||||||| ||||||||||| |||| |||||||||| |||| |||||||| |||||||||| |||||| ||||| | ||||||||||||||||| |
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|
| T |
32849189 |
gattaaactaaccttgttcttttgaatcatgagaacttgaagcataggacattcttgaagcaagttgagcagataattgaatctaaaccagggaagaatg |
32849288 |
T |
|
| Q |
151 |
agctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgt-ccacattatcaagtagcaattagtac |
249 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||| ||||||| | |||||| ||||||||||||||| || | | | ||||||||| ||||||||| |
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|
| T |
32849289 |
agctctaggcgaaccaaattgcgaaattcttgaaaatgtagatcatggggttcagcaagcagccactgtttgtactagaacatcaagtagtaattagtac |
32849388 |
T |
|
| Q |
250 |
aaaactatatctat |
263 |
Q |
| |
|
|||||||||||||| |
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|
| T |
32849389 |
aaaactatatctat |
32849402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 9 - 41
Target Start/End: Complemental strand, 17478542 - 17478510
Alignment:
| Q |
9 |
atgtaatctatttaataaaaattggttaatttc |
41 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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|
| T |
17478542 |
atgtaatctatttcataaaaattggttaatttc |
17478510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 6e-53; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 44 - 268
Target Start/End: Original strand, 8382562 - 8382789
Alignment:
| Q |
44 |
attaagcgtcgattaaacaaacct---tgttctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagagaattggagttaaacca |
140 |
Q |
| |
|
||||||| | |||||||||||||| |||| ||||||| |||||| | || | ||||||||| ||||||||| || |||||||||||| ||||||| |
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|
| T |
8382562 |
attaagctttgattaaacaaacctccttgtttcgaattttaagaactcgaagaataggacatttgtgaagcaagctgaggagagaattggagctaaacca |
8382661 |
T |
|
| Q |
141 |
gggaagaatgagctctaaatgaagcaaatagcgaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgtccacattatcaagtagc |
240 |
Q |
| |
|
||||||| |||| |||||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||| |
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|
| T |
8382662 |
gggaagagtgagatctaaatgaagcaaattgcaaaattcttgaaaaagtagatcacggggttcaccaagcagccactgttcgtccgcattgtcaagtatt |
8382761 |
T |
|
| Q |
241 |
aattagtacaaaactatatctatctata |
268 |
Q |
| |
|
|||||||||||||| |||| |||||||| |
|
|
| T |
8382762 |
aattagtacaaaaccatatatatctata |
8382789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 73 - 260
Target Start/End: Original strand, 8366591 - 8366778
Alignment:
| Q |
73 |
tgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagagaattggagttaaaccagggaagaatgagctctaaatgaagcaaatagc |
172 |
Q |
| |
|
|||||||| ||||| || || | ||||||||| ||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||||| ||||| |
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|
| T |
8366591 |
tgaattttaagaacctgaagaataggacatttgtgaagcaagctgagaagagaattggagtcaaaccagggaagaatgatatctaaatgaagcagatagc |
8366690 |
T |
|
| Q |
173 |
gaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgtccacattatcaagtagcaattagtacaaaactatatc |
260 |
Q |
| |
|
||| |||||||||| ||||||||| ||||||||||||||||||||||||||| |||| ||||||| |||||||||||||| ||||| |
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|
| T |
8366691 |
aaaaatcttgaaaaagtagatcacggggttcaccaagcagccactgttcgtccgcattgtcaagtattaattagtacaaaaccatatc |
8366778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 42
Target Start/End: Original strand, 8366502 - 8366539
Alignment:
| Q |
5 |
atttatgtaatctatttaataaaaattggttaatttcg |
42 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8366502 |
atttatgtaatctattttataaaatttggttaatttcg |
8366539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 8382806 - 8382858
Alignment:
| Q |
311 |
ttactaacttactctatataaatgatgaagcaaacttcaaataactaacataa |
363 |
Q |
| |
|
|||||||||||| | |||||||| |||||| |||| |||||||||||| |||| |
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|
| T |
8382806 |
ttactaacttacaccatataaattatgaagtaaacatcaaataactaaaataa |
8382858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 70 - 267
Target Start/End: Complemental strand, 8341511 - 8341314
Alignment:
| Q |
70 |
ttctgaattttgagaacttgtagcacaggacatttttgaagcaaggaaagcagagaattggagttaaaccagggaagaatgagctctaaatgaagcaaat |
169 |
Q |
| |
|
||||||||| ||||| ||| |||| |||||||| |||| |||| || |||||||| ||||||||||||| ||||| |||||| | ||| ||||| |
|
|
| T |
8341511 |
ttctgaattatgagaggttggagcaagggacatttctgaatcaagtggagaagagaatttgagttaaaccaggaaagaacgagctcaaggcgaatcaaat |
8341412 |
T |
|
| Q |
170 |
agcgaaattcttgaaaaaatagatcacgaggttcaccaagcagccactgttcgtccacattatcaagtagcaattagtacaaaactatatctatctat |
267 |
Q |
| |
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| ||||||||||||||| | ||| | |||||||| ||||||||||||| || ||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
8341411 |
attgaaattcttgaaaaagcatctcatggggttcacctagcagccactgtttgtacacgatatcaagtagtaattagtacaaaactatatctatctat |
8341314 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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