View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_low_19 (Length: 355)

Name: NF3011_low_19
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_low_19
NF3011_low_19
[»] chr8 (6 HSPs)
chr8 (26-352)||(24955073-24955400)
chr8 (47-198)||(15588150-15588301)
chr8 (62-120)||(9452614-9452672)
chr8 (47-129)||(24970876-24970958)
chr8 (26-86)||(19445348-19445408)
chr8 (26-86)||(19535669-19535729)
[»] chr6 (5 HSPs)
chr6 (62-239)||(14637769-14637946)
chr6 (59-234)||(15669449-15669623)
chr6 (73-160)||(26339336-26339423)
chr6 (73-120)||(1222611-1222658)
chr6 (292-352)||(14637647-14637707)
[»] chr4 (7 HSPs)
chr4 (47-186)||(44742541-44742680)
chr4 (47-186)||(13089648-13089787)
chr4 (52-186)||(4528503-4528638)
chr4 (52-103)||(23201713-23201764)
chr4 (68-120)||(41396606-41396658)
chr4 (25-87)||(51930471-51930533)
chr4 (73-129)||(31430402-31430458)
[»] chr1 (5 HSPs)
chr1 (62-239)||(5333797-5333973)
chr1 (59-171)||(6579747-6579859)
chr1 (30-172)||(17010862-17011004)
chr1 (30-182)||(32603125-32603277)
chr1 (73-198)||(6249806-6249931)
[»] chr7 (7 HSPs)
chr7 (62-171)||(9792459-9792568)
chr7 (52-186)||(38795341-38795475)
chr7 (63-196)||(12487957-12488090)
chr7 (54-151)||(27619276-27619373)
chr7 (52-110)||(28106899-28106957)
chr7 (59-109)||(39512224-39512274)
chr7 (23-143)||(2405493-2405613)
[»] chr3 (4 HSPs)
chr3 (52-151)||(36330685-36330784)
chr3 (30-198)||(8100274-8100442)
chr3 (47-186)||(25704771-25704910)
chr3 (62-120)||(25163932-25163990)
[»] chr2 (3 HSPs)
chr2 (63-197)||(45297532-45297666)
chr2 (54-186)||(10256911-10257043)
chr2 (24-91)||(31836980-31837047)
[»] scaffold0049 (1 HSPs)
scaffold0049 (30-198)||(13331-13499)
[»] chr5 (5 HSPs)
chr5 (62-171)||(29963923-29964032)
chr5 (62-171)||(30010766-30010875)
chr5 (53-186)||(31956322-31956459)
chr5 (75-173)||(3068525-3068627)
chr5 (24-87)||(40659695-40659758)


Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 26 - 352
Target Start/End: Original strand, 24955073 - 24955400
Alignment:
Q  26 gtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactt 125  Q
    |||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||    
T  24955073 gtagtgtttgacctggcttaattttaacttctattctacttttaagaagaagtagggccaaacataattttaataaagctcttaataaaataagtaactt 24955172  T
Q  126 ttttataaagaagaaaaaccaataaaattgactttaaaaataagatgtgaaagtgaactttgaaacaactttttggcagtgatatccccttgttcacctt 225  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||| |||    
T  24955173 ttttataaagaagaaaaaccaataaaagtaactttaaaaataagatgggaaagtgaactttgaaacaacttttcggtagtgatatccccttgttcagctt 24955272  T
Q  226 cgattcccgcacat-atgctatgttcctcannnnnnnnnnnnnnnncacaaaatcccgccaaacctttttcaggaaaccgccaaagaagcataaacctag 324  Q
    ||||||||||||||  | ||||||||||||                | ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  24955273 cgattcccgcacatgctactatgttcctcattttttattattttttcccaaaatcccgccaaacctttttcagaaaaccgccaaagaagcataaacctag 24955372  T
Q  325 ttataaatatccattgcatttctgtgct 352  Q
    ||||||||||||||||||||||||||||    
T  24955373 ttataaatatccattgcatttctgtgct 24955400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 198
Target Start/End: Complemental strand, 15588301 - 15588150
Alignment:
Q  47 ttttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaacca 146  Q
    |||| |||||| ||||||||  ||| |||||||||| |||| ||||||||||||||| |||||| || | ||||| |||||||| || |||  ||| | |    
T  15588301 ttttcacttctcttctactttcaaggagaagtagggtcaaacacaattttaataaagttcttaataagagaagtatcttttttaaaaggaaagaaatcaa 15588202  T
Q  147 ataaaattgactttaaaaataagatgtgaaagtgaactttgaaacaactttt 198  Q
    ||| || ||||||| |||||||||||| ||| | |||||  | |||||||||    
T  15588201 atagaaatgacttttaaaataagatgtaaaattaaacttctagacaactttt 15588150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 9452614 - 9452672
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagt 120  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||||| ||||| ||||    
T  9452614 tacttctaaggagaagtagggccaaacacaattttaaaaaagctcttatcaaaagaagt 9452672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 129
Target Start/End: Original strand, 24970876 - 24970958
Alignment:
Q  47 ttttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactttttt 129  Q
    |||| |||||| ||||||||||||  ||||||||||||||| | ||||||||||||| |||||| || | ||||| |||||||    
T  24970876 ttttcacttctcttctacttctaaagagaagtagggccaaacataattttaataaagttcttaataatagaagtatctttttt 24970958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Original strand, 19445348 - 19445408
Alignment:
Q  26 gtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaa 86  Q
    |||||||||||||||  ||||||||||||||| |||| |||  |||||||||  |||||||    
T  19445348 gtagtgtttggcctgacttaattttaacttctcttcttctttaaagaagaagatgggccaa 19445408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 19535729 - 19535669
Alignment:
Q  26 gtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaa 86  Q
    |||||||||||||||  ||||||||||||||| |||| |||  |||||||||  |||||||    
T  19535729 gtagtgtttggcctgacttaattttaacttctcttcttctttaaagaagaagatgggccaa 19535669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 14637946 - 14637769
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgacttta 161  Q
    |||||||||| |||||| |||||||| | ||||||| ||||| |||||| ||||||||| || ||||| |||||||| ||| |||| |||| ||||||||    
T  14637946 tacttctaaggagaagtggggccaaacataattttagtaaagttcttaataaaataagtgacgtttttgtaaagaaggaaatccaacaaaaatgacttta 14637847  T
Q  162 aaaataagatgtgaaagtgaactttgaaacaactttttggcagtgatatccccttgttcaccttcgattcccgcacat 239  Q
    |||||||||||||||| ||||||||  |||||||||||| || | |||||  ||| | ||||||||||||||||||||    
T  14637846 aaaataagatgtgaaattgaactttagaacaactttttgacacttatatcagcttctgcaccttcgattcccgcacat 14637769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 15669623 - 15669449
Alignment:
Q  59 ttctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgact 158  Q
    |||||||||||||||||||| ||| |||| ||||||||||| ||  |||||| |||||||||  |||||||  || |||| |||   ||||||| |||||    
T  15669623 ttctacttctaagaagaagtggggtcaaacacaattttaattaaattcttaataaaataagtgtcttttttgcaatgaaggaaatgtaataaaagtgact 15669524  T
Q  159 ttaaaaataagatgtgaaagtgaactttgaaacaactttttggcagtgatatccccttgttcaccttcgattcccg 234  Q
    |||||||||||||| |||| ||||||||| | |||||| | || |||  ||| ||||||| |||||||||||||||    
T  15669523 ttaaaaataagatgagaaaatgaactttggagcaacttctcgg-agttgtattcccttgtgcaccttcgattcccg 15669449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 160
Target Start/End: Complemental strand, 26339423 - 26339336
Alignment:
Q  73 agaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgacttt 160  Q
    |||||| |||||||| | |||||| ||||||||||||| || | |||| ||||||||||||||||| ||| |||| |||| |||||||    
T  26339423 agaagtggggccaaacataattttgataaagctcttaataatagaagtgacttttttataaagaaggaaatccaacaaaagtgacttt 26339336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 1222611 - 1222658
Alignment:
Q  73 agaagtagggccaaatacaattttaataaagctcttaacaaaataagt 120  Q
    ||||||||||||||| |||||||||| |||||||||| ||||| ||||    
T  1222611 agaagtagggccaaacacaattttaaaaaagctcttatcaaaagaagt 1222658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 14637707 - 14637647
Alignment:
Q  292 tttcaggaaaccgccaaagaagcataaacctagttataaatatccattgcatttctgtgct 352  Q
    ||||||||||||||||||  |||| |||||||||| || ||||| |||| ||||| |||||    
T  14637707 tttcaggaaaccgccaaaacagcagaaacctagttgtatatatctattgaatttcagtgct 14637647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 44742541 - 44742680
Alignment:
Q  47 ttttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaacca 146  Q
    |||| |||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||  |||||||| ||||||| |||  ||    
T  44742541 ttttcacttctcttctacttctaagaagaagtggggccaaacacaattttaataaagctcttaataaaataagtgtcttttttacaaagaaggaaattca 44742640  T
Q  147 ataaaattgactttaaaaataagatgtgaaagtgaacttt 186  Q
    |||||| | | ||| |||||||| |||||||| |||||||    
T  44742641 ataaaagttagtttgaaaataagttgtgaaagggaacttt 44742680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 13089648 - 13089787
Alignment:
Q  47 ttttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaacca 146  Q
    |||| |||||| |||||||||||||||||||| ||| |||| |||||||||| ||||||||||| |||||||||  |||||||| ||||||| |||  ||    
T  13089648 ttttcacttctcttctacttctaagaagaagtggggtcaaacacaattttaacaaagctcttaataaaataagtgtcttttttacaaagaaggaaattca 13089747  T
Q  147 ataaaattgactttaaaaataagatgtgaaagtgaacttt 186  Q
    |||||| | | ||| |||||||| |||||||| |||||||    
T  13089748 ataaaagtcagtttgaaaataagttgtgaaagggaacttt 13089787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 186
Target Start/End: Complemental strand, 4528638 - 4528503
Alignment:
Q  52 acttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaac-ttttttataaagaagaaaaaccaataa 150  Q
    |||||| ||||||||  ||||||||||||||||||| ||||||||||||||| |||||| || | ||||| | ||||||  || |||  ||| | ||||     
T  4528638 acttctcttctactttcaagaagaagtagggccaaacacaattttaataaagttcttaataatagaagtatctttttttggaaggaaagaaatcaaatag 4528539  T
Q  151 aattgactttaaaaataagatgtgaaagtgaacttt 186  Q
    || ||||||| |||||||||||| ||| ||||||||    
T  4528538 aagtgacttttaaaataagatgtaaaattgaacttt 4528503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 103
Target Start/End: Complemental strand, 23201764 - 23201713
Alignment:
Q  52 acttctattctacttctaagaagaagtagggccaaatacaattttaataaag 103  Q
    |||||| ||||||||||||| ||||||||||||||| | |||||||||||||    
T  23201764 acttctcttctacttctaaggagaagtagggccaaacataattttaataaag 23201713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 41396606 - 41396658
Alignment:
Q  68 taagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagt 120  Q
    |||| ||||||||||||||| |||||||||| |||||||||| ||||| ||||    
T  41396606 taaggagaagtagggccaaacacaattttaaaaaagctcttatcaaaagaagt 41396658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 51930533 - 51930471
Alignment:
Q  25 ggtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaa 87  Q
    |||||||||||| | |  ||||||||||||||| ||||||||  |||||||||| ||||||||    
T  51930533 ggtagtgtttggacagacttaattttaacttctcttctactttaaagaagaagttgggccaaa 51930471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 31430458 - 31430402
Alignment:
Q  73 agaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactttttt 129  Q
    ||||||||||||||| | ||||||||||||| |||||| || | ||||| |||||||    
T  31430458 agaagtagggccaaacataattttaataaagttcttaataatagaagtatctttttt 31430402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 5333973 - 5333797
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgacttta 161  Q
    ||||||||||| ||||| | |||||| | ||||||| |||| ||||||| ||||||||| |||||||| |||||||| ||| |||| |||| ||| ||||    
T  5333973 tacttctaaga-gaagtggagccaaacataattttagtaaaactcttaataaaataagttacttttttgtaaagaaggaaatccaacaaaaatgatttta 5333875  T
Q  162 aaaataagatgtgaaagtgaactttgaaacaactttttggcagtgatatccccttgttcaccttcgattcccgcacat 239  Q
    |||||||||||||||| ||||||||| ||||||||||  ||| | |||||  ||| | |||||| ||||| |||||||    
T  5333874 aaaataagatgtgaaattgaactttggaacaacttttcagcatttatatcagcttctgcacctttgattctcgcacat 5333797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 6579859 - 6579747
Alignment:
Q  59 ttctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgact 158  Q
    |||||||||||||   |||| |||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||||| ||| |||| |||| |||||    
T  6579859 ttctacttctaaggtaaagtggggccaaacacaattttaataaagctcttaataaaagaagtgacttttttgtaaagaaggaaatccaacaaaagtgact 6579760  T
Q  159 ttaaaaataagat 171  Q
    || ||||||||||    
T  6579759 ttgaaaataagat 6579747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 172
Target Start/End: Original strand, 17010862 - 17011004
Alignment:
Q  30 tgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactttttt 129  Q
    |||||||||  | |||||||| |||| | |||||||||||||||||||| |||||||| ||||||||||| ||| |||||| |||| ||||  |||||||    
T  17010862 tgtttggccctgcttaattttcacttatcttctacttctaagaagaagtggggccaaacacaattttaattaagttcttaataaaagaagtgtctttttt 17010961  T
Q  130 ataaagaagaaaaaccaataaaattgactttaaaaataagatg 172  Q
      || |||| |||   ||||||| ||||||| |||||||||||    
T  17010962 gcaatgaaggaaatgtaataaaagtgactttgaaaataagatg 17011004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 182
Target Start/End: Original strand, 32603125 - 32603277
Alignment:
Q  30 tgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactttttt 129  Q
    |||||||||  | ||| |||| |||||| ||||||||  ||| ||||||||||||||| ||||||||||||||| |||||| || | ||||| |||||||    
T  32603125 tgtttggccctgcttatttttcacttctcttctactttcaaggagaagtagggccaaacacaattttaataaagttcttaataagagaagtatctttttt 32603224  T
Q  130 ataaagaagaaaaaccaataaaattgactttaaaaataagatgtgaaagtgaa 182  Q
      || |||  ||| | |||| || ||||||| |||||||||||| ||| ||||    
T  32603225 ggaaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaa 32603277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 6249931 - 6249806
Alignment:
Q  73 agaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgactttaaaaataagatg 172  Q
    ||||||| || |||| ||||||||||||||| |||||| |||| ||||| |||||||| || |||  ||| | |||| || ||||||| |||||||||||    
T  6249931 agaagtatggtcaaacacaattttaataaagttcttaataaaagaagtatcttttttagaaggaaagaaatcaaatagaaatgacttttaaaataagatg 6249832  T
Q  173 tgaaagtgaactttgaaacaactttt 198  Q
    | ||| |||||||  | |||||||||    
T  6249831 taaaattgaacttctagacaactttt 6249806  T

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Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 9792568 - 9792459
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgacttta 161  Q
    ||||| ||||||||||| |||||||| |||||||||||||||||||||| |||| |||| |||||||| |||||||| ||| |||| |||| |||||||     
T  9792568 tacttttaagaagaagtggggccaaacacaattttaataaagctcttaataaaagaagtgacttttttgtaaagaaggaaatccaacaaaaatgactttg 9792469  T
Q  162 aaaataagat 171  Q
    ||||||||||    
T  9792468 aaaataagat 9792459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 52 - 186
Target Start/End: Original strand, 38795341 - 38795475
Alignment:
Q  52 acttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaa 151  Q
    |||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||| || | ||||| ||||||| |||||||  ||| | ||||||    
T  38795341 acttctcttctacttctaaggagaagtagggccaaacataattttaataaagttcttaataatagaagtatcttttttttaaagaatgaaatcaaataaa 38795440  T
Q  152 attgactttaaaaataagatgtgaaagtgaacttt 186  Q
    | ||||||  |||||||||| | ||| ||||||||    
T  38795441 agtgacttccaaaataagatataaaattgaacttt 38795475  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 196
Target Start/End: Original strand, 12487957 - 12488090
Alignment:
Q  63 acttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgactttaa 162  Q
    |||||||||||||||||||| | || |||||||||||||| |||||  ||||| ||||||||| ||| |||||||||||| |  ||| || ||||||| |    
T  12487957 acttctaagaagaagtagggtcgaacacaattttaataaaactctttgcaaaagaagtaacttatttgtaaagaagaaaaccacatagaagtgactttta 12488056  T
Q  163 aaataagatgtgaaagtgaactttgaaacaactt 196  Q
    ||||||| |||  || |||||||| || ||||||    
T  12488057 aaataagttgttgaaatgaactttaaaccaactt 12488090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 27619276 - 27619373
Alignment:
Q  54 ttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaa 151  Q
    |||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||| || | ||||| ||||||| ||| |||| ||| | ||||||    
T  27619276 ttctcttctacttctaaggagaagtagggccaaacataattttaataaagttcttaataatagaagtatcttttttttaaggaagtaaatcaaataaa 27619373  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 28106899 - 28106957
Alignment:
Q  52 acttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaa 110  Q
    |||||| ||||||||||||||||||||||  ||||| | ||||||||||||| ||||||    
T  28106899 acttctcttctacttctaagaagaagtagaaccaaacataattttaataaagttcttaa 28106957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 39512274 - 39512224
Alignment:
Q  59 ttctacttctaagaagaagtagggccaaatacaattttaataaagctctta 109  Q
    ||||||||||||  ||||||||||||||| |||||||||| ||||||||||    
T  39512274 ttctacttctaaagagaagtagggccaaacacaattttaaaaaagctctta 39512224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 2405493 - 2405613
Alignment:
Q  23 aaggtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaa 122  Q
    |||||||||||||||  |  ||||||||||||||| ||||||||  | |||||||| |||||||| ||| ||   |  |||||||||| |||| |||| |    
T  2405493 aaggtagtgtttggctcgacttaattttaacttctcttctactttaaggaagaagttgggccaaacacatttcataagaagctcttaataaaaaaagtga 2405592  T
Q  123 cttttttataaagaagaaaaa 143  Q
    |||  | ||||||||||||||    
T  2405593 cttaataataaagaagaaaaa 2405613  T

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Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 52 - 151
Target Start/End: Original strand, 36330685 - 36330784
Alignment:
Q  52 acttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaa 151  Q
    |||||| |||||||||||||||||||| ||| |||| ||||||||||||||||| |||| |||||||||  |||||||| ||||||| ||| ||||||||    
T  36330685 acttctcttctacttctaagaagaagtggggtcaaacacaattttaataaagcttttaataaaataagtgtcttttttacaaagaaggaaatccaataaa 36330784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 8100442 - 8100274
Alignment:
Q  30 tgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactttttt 129  Q
    |||||||||  | ||| |||| |||||| ||||||||  ||| |||||||| |||||| ||||||||||||||| |||||| || | ||||| |||||||    
T  8100442 tgtttggccctgcttatttttcacttctcttctactttcaaggagaagtagagccaaacacaattttaataaagttcttaataagagaagtatctttttt 8100343  T
Q  130 ataaagaagaaaaaccaataaaattgactttaaaaataagatgtgaaagtgaactttgaaacaactttt 198  Q
      || |||  ||| | |||| || ||||||| |||||||||||| ||| |||||||  | |||||||||    
T  8100342 gaaaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaacttctagacaactttt 8100274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 47 - 186
Target Start/End: Original strand, 25704771 - 25704910
Alignment:
Q  47 ttttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaacca 146  Q
    |||| |||||| |||||||| |||| ||||||||||||||| ||||||||||||||| | |||| || | ||||| |||||||  || |||  ||| | |    
T  25704771 ttttcacttctcttctacttttaaggagaagtagggccaaacacaattttaataaagttattaataatagaagtatcttttttggaaggaaagaaatcaa 25704870  T
Q  147 ataaaattgactttaaaaataagatgtgaaagtgaacttt 186  Q
    ||| ||   ||||| |||||||||||| ||| ||||||||    
T  25704871 atagaagcaacttttaaaataagatgtaaaattgaacttt 25704910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 25163932 - 25163990
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagt 120  Q
    |||||||||| ||||||||||||||| ||||||| || |||||||||| ||||| ||||    
T  25163932 tacttctaaggagaagtagggccaaacacaatttaaaaaaagctcttatcaaaagaagt 25163990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 63 - 197
Target Start/End: Complemental strand, 45297666 - 45297532
Alignment:
Q  63 acttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgactttaa 162  Q
    ||||||||| ||||||||||||||| ||||||||||||||||||||   |||||||||| ||| ||||||||||||||||    ||| || ||||||| |    
T  45297666 acttctaaggagaagtagggccaaacacaattttaataaagctctttctaaaataagtaccttatttataaagaagaaaactacatagaaatgactttca 45297567  T
Q  163 aaataagatgtgaaagtgaactttgaaacaacttt 197  Q
    ||||||| |||  || |||||||  ||||||||||    
T  45297566 aaataaggtgttgaaatgaacttaaaaacaacttt 45297532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 54 - 186
Target Start/End: Original strand, 10256911 - 10257043
Alignment:
Q  54 ttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaat 153  Q
    |||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||| || | ||||| ||||||| |||||||  ||| | |||||||     
T  10256911 ttctcttctacttctaaggagaagtagggccaaacataattttaataaagttcttaataatagaagtatcttttttttaaagaatgaaatcaaataaaag 10257010  T
Q  154 tgactttaaaaataagatgtgaaagtgaacttt 186  Q
    ||||||  |||||||||| | ||| ||||||||    
T  10257011 tgacttccaaaataagatataaaattgaacttt 10257043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 31836980 - 31837047
Alignment:
Q  24 aggtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaataca 91  Q
    ||||||||||||||| |  ||||||||||||||| || | |||  |||||||||| ||||||||||||    
T  31836980 aggtagtgtttggccagacttaattttaacttctctttttctttaaagaagaagttgggccaaataca 31837047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 13499 - 13331
Alignment:
Q  30 tgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaactttttt 129  Q
    |||||||||  | ||| |||| |||||| ||||||||  ||| ||||||||||||||| ||||||||||||||| |||||| || | ||||| |||||||    
T  13499 tgtttggccctgcttagttttcacttctcttctactttcaaggagaagtagggccaaacacaattttaataaagttcttaataagagaagtatctttttt 13400  T
Q  130 ataaagaagaaaaaccaataaaattgactttaaaaataagatgtgaaagtgaactttgaaacaactttt 198  Q
      || |||  ||| | |||| || ||||||| |||||||||||| ||| |||||||  |||||||||||    
T  13399 gaaaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaacttctaaacaactttt 13331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 171
Target Start/End: Original strand, 29963923 - 29964032
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgacttta 161  Q
    |||||||||  |||||| |||||||| | |||||| ||||||||||||| || | |||| |||||||| |||||||| ||| |||| |||| |||||||     
T  29963923 tacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgacttttttgtaaagaaggaaatccaacaaaagtgactttg 29964022  T
Q  162 aaaataagat 171  Q
    ||||||||||    
T  29964023 aaaataagat 29964032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 171
Target Start/End: Complemental strand, 30010875 - 30010766
Alignment:
Q  62 tacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaacttttttataaagaagaaaaaccaataaaattgacttta 161  Q
    |||||||||  |||||| |||||||| | |||||| ||||||||||||| || | |||| |||||||| |||||||| ||| |||| |||| |||||||     
T  30010875 tacttctaaagagaagtggggccaaacataattttgataaagctcttaataatagaagtgacttttttgtaaagaaggaaatccaacaaaagtgactttg 30010776  T
Q  162 aaaataagat 171  Q
    ||||||||||    
T  30010775 aaaataagat 30010766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 186
Target Start/End: Complemental strand, 31956459 - 31956322
Alignment:
Q  53 cttctattctacttctaagaagaagtagggccaaatacaattttaataaagctcttaacaaaataagtaac----ttttttataaagaagaaaaaccaat 148  Q
    ||||| ||||||||||||| ||||||||||||||| | ||||||||||||| |||||| || | ||||  |    |||||| |||||||| ||| | |||    
T  31956459 cttctcttctacttctaaggagaagtagggccaaacataattttaataaagttcttaataatagaagtttcttttttttttttaaagaaggaaatcaaat 31956360  T
Q  149 aaaattgactttaaaaataagatgtgaaagtgaacttt 186  Q
    |||| |||||| ||||||||||| | ||| ||||||||    
T  31956359 aaaagtgacttcaaaaataagatataaaattgaacttt 31956322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 173
Target Start/End: Complemental strand, 3068627 - 3068525
Alignment:
Q  75 aagtagggccaaatacaattttaataaagctctt----aacaaaataagtaacttttttataaagaagaaaaaccaataaaattgactttaaaaataaga 170  Q
    ||||||||||||| ||||||||||||||||||||    || |||| ||||| ||| ||| ||| |||||||| | |||| || ||||||| |||||||||    
T  3068627 aagtagggccaaacacaattttaataaagctctttataaaaaaaaaaagtatcttatttgtaatgaagaaaaccaaatagaagtgactttcaaaataaga 3068528  T
Q  171 tgt 173  Q
    |||    
T  3068527 tgt 3068525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 87
Target Start/End: Complemental strand, 40659758 - 40659695
Alignment:
Q  24 aggtagtgtttggcctggattaattttaacttctattctacttctaagaagaagtagggccaaa 87  Q
    ||||||||||||||| |  ||||||||||||||| ||||||||  |||||||||||||| ||||    
T  40659758 aggtagtgtttggcccgacttaattttaacttctcttctactttaaagaagaagtagggacaaa 40659695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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