View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_low_2 (Length: 833)

Name: NF3011_low_2
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_low_2
NF3011_low_2
[»] chr6 (5 HSPs)
chr6 (138-481)||(6956490-6956827)
chr6 (595-827)||(6956942-6957174)
chr6 (20-88)||(6955972-6956040)
chr6 (710-756)||(11321604-11321650)
chr6 (711-748)||(26588611-26588648)
[»] scaffold0024 (1 HSPs)
scaffold0024 (157-424)||(14150-14421)
[»] chr1 (5 HSPs)
chr1 (710-808)||(47132810-47132907)
chr1 (710-756)||(23291778-23291824)
chr1 (710-756)||(26535305-26535351)
chr1 (710-751)||(1742191-1742232)
chr1 (710-751)||(31918900-31918941)
[»] chr2 (3 HSPs)
chr2 (710-819)||(43397194-43397302)
chr2 (710-756)||(4904281-4904327)
chr2 (710-756)||(36691792-36691837)
[»] chr5 (2 HSPs)
chr5 (710-805)||(11977023-11977118)
chr5 (710-756)||(8096633-8096679)
[»] chr7 (3 HSPs)
chr7 (710-756)||(37837594-37837640)
chr7 (769-819)||(45349873-45349923)
chr7 (769-818)||(3394438-3394487)
[»] chr8 (1 HSPs)
chr8 (769-819)||(3673408-3673458)
[»] chr3 (1 HSPs)
chr3 (710-756)||(47896059-47896105)
[»] chr4 (2 HSPs)
chr4 (710-751)||(9713835-9713876)
chr4 (710-751)||(22305718-22305759)


Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 138 - 481
Target Start/End: Original strand, 6956490 - 6956827
Alignment:
Q  138 ctagggtaactctgataccatattgatgttaccaaatcaaaagataaaagttaatgaatagaaatatatgaaaattgtattaatatgatatatgagaagt 237  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6956490 ctagggtaactctgataccatattgatgttaccaaaccaaaagagaaaagttaatgaatagaaatatatgaaaattgtattaatatgatatatgagaagt 6956589  T
Q  238 ttgctttctgtacatagagaaggagaacaccttctctttatatagtctaactatagagccgttagtaacaatacagactagctcatcacaataactacaa 337  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |      ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6956590 ttgctttctgtacatagagagggagaacaccttctctttatataat------atagagccgttagtaacaatacagactagctcatcacaataactacaa 6956683  T
Q  338 gtaattacatattaaactaatttgaacaagtaacaatcaatttcaattaattacacatttggtccagtaatatcaggaggtaatacttgaatgaatatgt 437  Q
     |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  6956684 ttaattacatattaaactaatttgaccaaataacaatcaatttcaattaattacacatttgttcaagtaatatcaggaggtaatacttgaatgaatatgt 6956783  T
Q  438 tatgatttaagatcatttaaatatgaagactcaaataaactaca 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6956784 tatgatttaagatcatttaaatatgaagactcaaataaactaca 6956827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 595 - 827
Target Start/End: Original strand, 6956942 - 6957174
Alignment:
Q  595 gtttgaaaaactctacattttatatatgttctttttctcggtcagtcatcgaggaatgattgttttaggtctctttgac--agagttattgttctgcann 692  Q
    ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||| ||||||        
T  6956942 gtttgaaaaactctacagtttatatatgttctttttctcggtcactcatcgaggaatgattgttttatgtctctttgacatagagttatcgttctgattt 6957041  T
Q  693 nnnnnnnnnnnnnnnnncaatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttg 792  Q
                     |||||| |||||||||||| |||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  6957042 tttttatcttcttttttcaatct-aataagtggtttttacatatattaagttttttcttatgtg-tttttccgtggtttcgtcgtctgattgtggtgttg 6957139  T
Q  793 tgttgttcgtcgttttatgtggtgtttcatctcac 827  Q
    |||||||||||||||||||||||||||||| ||||    
T  6957140 tgttgttcgtcgttttatgtggtgtttcatttcac 6957174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 6955972 - 6956040
Alignment:
Q  20 caagtaaaggtgtaacaagaattaaagagggattttcattagggtgaaggtaataaggatttgaagggt 88  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6955972 caagtaaaggtgtaacaagaattaaagagggattttcattaggatgaaggtaataaggatttgaagggt 6956040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 756
Target Start/End: Complemental strand, 11321650 - 11321604
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  11321650 caatctaaataagtggttttcacatatattaagttttttcttttgtg 11321604  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 748
Target Start/End: Complemental strand, 26588648 - 26588611
Alignment:
Q  711 aatctaaataagtggtttctacatatattaagtttttt 748  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  26588648 aatctaaataagtggtttccacatatatcaagtttttt 26588611  T

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Target: scaffold0024 (Bit Score: 215; Significance: 1e-117; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 157 - 424
Target Start/End: Complemental strand, 14421 - 14150
Alignment:
Q  157 atattgatgttaccaaatcaaaagataaaagttaatgaatagaaatatatgaaaattgtattaatatgatatatgagaagtttgctttctgtacata--- 253  Q
    ||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       
T  14421 atattgatgttaccaagccaaaagagaaaagttaatgaatagaaatatatgaaaattgtattaatatgatatatgagaagtttgctttctgtacatatat 14322  T
Q  254 -gagaaggagaacaccttctctttatatagtctaactatagagccgttagtaacaatacagactagctcatcacaataactacaagtaattacatattaa 352  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  14321 agagaaggagaacaccttctctttatatagtctaactatagagccgttagtaacaatacagattagctcatcacaataactacaattaattacatattaa 14222  T
Q  353 actaatttgaacaagtaacaatcaatttcaattaattacacatttggtccagtaatatcaggaggtaatact 424  Q
    | |||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||    
T  14221 attaatttgaccaagtaacaatcaattacaattaattacacatttggtcaagtaatatcagtaggtaatact 14150  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 710 - 808
Target Start/End: Original strand, 47132810 - 47132907
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttgtgttgttcgtcgtttt 808  Q
    ||||||||||||||| ||||||||||||| |||| ||||||| ||||        ||| ||||||||||||| || || ||||||||||||||||||||    
T  47132810 caatctaaataagtgatttctacatatatcaagtgttttcttttgtg-ctttttcgtgatttcgtcgtctgagtggggcgttgtgttgttcgtcgtttt 47132907  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 756
Target Start/End: Complemental strand, 23291824 - 23291778
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  23291824 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 23291778  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 756
Target Start/End: Original strand, 26535305 - 26535351
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  ||||||||||||||||| ||| ||||    
T  26535305 caatctaaataagtggttttcacatatattaagtttttccttttgtg 26535351  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 751
Target Start/End: Original strand, 1742191 - 1742232
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttctt 751  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  1742191 caatctaaataagtggttttcacatatatcaagttttttctt 1742232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 751
Target Start/End: Original strand, 31918900 - 31918941
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttctt 751  Q
    |||||||||||||||||||  |||||||| ||||||||||||    
T  31918900 caatctaaataagtggttttcacatatatcaagttttttctt 31918941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 710 - 819
Target Start/End: Complemental strand, 43397302 - 43397194
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttgtgttgttcgtcgtttta 809  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||        ||| ||||||||||| | ||||| ||||||||||||||||| ||     
T  43397302 caatctaaataagtggttttcacatatatcaagttttttcttttgtg-ttttttcgtgatttcgtcgtctaagtgtggcgttgtgttgttcgtcgtcttg 43397204  T
Q  810 tgtggtgttt 819  Q
    ||||| ||||    
T  43397203 tgtggcgttt 43397194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 756
Target Start/End: Complemental strand, 4904327 - 4904281
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  4904327 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 4904281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 756
Target Start/End: Original strand, 36691792 - 36691837
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||| |||||||| |||||||||||| ||||    
T  36691792 caatctaaataagtggtttc-acatatatcaagttttttcttttgtg 36691837  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 710 - 805
Target Start/End: Complemental strand, 11977118 - 11977023
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtgnnnnnnnngtggtttcgtcgtctgattgtggtgttgtgttgttcgtcgt 805  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||        ||| ||||||||||| | ||||| ||||| |||||||||||    
T  11977118 caatctaaataagtggttttcacatatatcaagttttttcttttgtgttttttttgtgatttcgtcgtctaagtgtggcgttgtattgttcgtcgt 11977023  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 756
Target Start/End: Complemental strand, 8096679 - 8096633
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  8096679 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 8096633  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 710 - 756
Target Start/End: Complemental strand, 37837640 - 37837594
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  ||||||||||||||||||||| ||||    
T  37837640 caatctaaataagtggtttacacatatattaagttttttcttttgtg 37837594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Complemental strand, 45349923 - 45349873
Alignment:
Q  769 tttcgtcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgttt 819  Q
    ||||||||||| | ||||| |||||||||||||||||||| ||||| ||||    
T  45349923 tttcgtcgtctaagtgtggcgttgtgttgttcgtcgttttgtgtggcgttt 45349873  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 769 - 818
Target Start/End: Original strand, 3394438 - 3394487
Alignment:
Q  769 tttcgtcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgtt 818  Q
    |||| |||||||| || |||||||||||||||||||| || |||||||||    
T  3394438 tttcatcgtctgagtgcggtgttgtgttgttcgtcgtcttgtgtggtgtt 3394487  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 769 - 819
Target Start/End: Original strand, 3673408 - 3673458
Alignment:
Q  769 tttcgtcgtctgattgtggtgttgtgttgttcgtcgttttatgtggtgttt 819  Q
    ||||||||||| | || |||||||||||||||||||| ||||| |||||||    
T  3673408 tttcgtcgtctaagtgcggtgttgtgttgttcgtcgtcttatgcggtgttt 3673458  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 710 - 756
Target Start/End: Original strand, 47896059 - 47896105
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttcttatgtg 756  Q
    |||||||||||||||||||  |||||||| |||||||||||| ||||    
T  47896059 caatctaaataagtggttttcacatatatcaagttttttcttttgtg 47896105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 751
Target Start/End: Original strand, 9713835 - 9713876
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttctt 751  Q
    ||||||||||||||| |||| |||||||| ||||||||||||    
T  9713835 caatctaaataagtgatttccacatatatcaagttttttctt 9713876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 751
Target Start/End: Complemental strand, 22305759 - 22305718
Alignment:
Q  710 caatctaaataagtggtttctacatatattaagttttttctt 751  Q
    |||||||||||||||||||||| |||||  ||||||||||||    
T  22305759 caatctaaataagtggtttctaaatataacaagttttttctt 22305718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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