View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_21 (Length: 350)
Name: NF3011_low_21
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 197 - 342
Target Start/End: Original strand, 1797037 - 1797185
Alignment:
| Q |
197 |
agactcagttatagaccatgccatgtcttcaagactttcaagtat---aaaaatacaaatcttgtctctctttgttattccaccaatgagannnnnnnnn |
293 |
Q |
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| T |
1797037 |
agactcagttatagaccatgccatgtcttcaagactttcaagtataaaaaaaatacaaatcttgtctctctttgttattccaccaatgagattttttttt |
1797136 |
T |
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| Q |
294 |
ngttacaccaccaatgagattagtatttcatttcttttactagaataat |
342 |
Q |
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| T |
1797137 |
tgttacaccaccaatgagattagtatttcatttcttttactataataat |
1797185 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 17 - 79
Target Start/End: Original strand, 1796851 - 1796913
Alignment:
| Q |
17 |
acaaagagagtttaaaaatattgaagatttaaaggtgcacgttggtctttgtagttaaacttc |
79 |
Q |
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| T |
1796851 |
acaaagagagtttaaaaatattgaagatttaaaggtgcacggtggtctttgtagttgaacttc |
1796913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 3528985 - 3528918
Alignment:
| Q |
200 |
ctcagttatagaccatgccatgtcttcaagactttcaagtataaaaatacaaatcttgtctctctttg |
267 |
Q |
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| T |
3528985 |
ctcagttatagaccatgccatgtcttcaaagctttcaagtataaaaatacaaatcttgcctctctttg |
3528918 |
T |
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