View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_22 (Length: 344)
Name: NF3011_low_22
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 32235533 - 32235217
Alignment:
| Q |
16 |
catatacctgtgttcttcttcagtccaatgtttcacgctgaccactttcttagtcttattcttagttggaggagctttgttctcatcggttgaagctttt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32235533 |
catatacctgtgttcttcttcagtccaatgtttcaccctgaccactttcttagtcttattcttagttggaggagctttgttctcatcggttgaagctttt |
32235434 |
T |
|
| Q |
116 |
gaaataataaaatcatcagagtttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32235433 |
gaaataataaaatcatcagagtttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcgg |
32235334 |
T |
|
| Q |
216 |
ttgatgatcgaccgcaaacaagagcaatattttcccatcgaccttcttgtacttcttcaatatattcaaagagaatggtctcaaagattttattttcatc |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
32235333 |
ttgatgatcgaccgcaaacaagaccaatattttcccatcgaccttcttgtacttcttcaagatattcaaagagaattgtctcaaagattttattttcatc |
32235234 |
T |
|
| Q |
316 |
ccatgtccactcctttg |
332 |
Q |
| |
|
||||||||| ||||||| |
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| T |
32235233 |
ccatgtccattcctttg |
32235217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 32247933 - 32247620
Alignment:
| Q |
16 |
catatacctgtgttcttcttcagtccaatgtttcacgctgaccactttcttagtcttattcttagttggaggagctttgttctcatcggttgaagctttt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||| |
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| T |
32247933 |
catatacctgtgttcttcttcagtccaatgtttcacgctgaccactttcttagtcttattcttagttggaggatctttcttctcatcgattgaagctttt |
32247834 |
T |
|
| Q |
116 |
gaaataataaaatcatcagagtttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcag |
215 |
Q |
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||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32247833 |
gaaataa---aatcatcagaatttgttgaaaaatcgacaagaccttcctcaatgagtgctaagtcatgcaacaatgtctcataatgttcttttacttcgg |
32247737 |
T |
|
| Q |
216 |
ttgatgatcgaccgcaaacaagagcaatattttcccatcgaccttcttgtacttcttcaatatattcaaagagaatggtctcaaagattttattttcatc |
315 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
32247736 |
ttgatgatcgaccgcaaacaagaccaatattttcccatcgaccttcttgtacttcttcaagatattcaaagagaatggtctcaaagattttattttcatc |
32247637 |
T |
|
| Q |
316 |
ccatgtccactcctttg |
332 |
Q |
| |
|
||||||||||||||||| |
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| T |
32247636 |
ccatgtccactcctttg |
32247620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 32271833 - 32271747
Alignment:
| Q |
17 |
atatacctgtgttcttcttcagtccaatgtttcacgctgaccactttcttagtcttattcttagttggaggagctttgttctcatcggttgaa |
109 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32271833 |
atatacctgtgttctacttcactccaatgtttcac------cactttcttagtcttattcttagttggaggagctttattctcatcggttgaa |
32271747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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