View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_low_27 (Length: 286)

Name: NF3011_low_27
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_low_27
NF3011_low_27
[»] chr5 (4 HSPs)
chr5 (20-180)||(13869358-13869518)
chr5 (43-180)||(27640992-27641129)
chr5 (230-269)||(13869251-13869290)
chr5 (230-269)||(27640886-27640925)
[»] scaffold0386 (2 HSPs)
scaffold0386 (20-180)||(1055-1215)
scaffold0386 (235-269)||(707-741)
[»] chr4 (4 HSPs)
chr4 (20-180)||(33878738-33878898)
chr4 (230-269)||(33878635-33878674)
chr4 (235-269)||(33879203-33879237)
chr4 (89-126)||(46673679-46673716)
[»] chr8 (3 HSPs)
chr8 (23-180)||(38460545-38460702)
chr8 (89-126)||(44428121-44428158)
chr8 (235-269)||(38460880-38460914)
[»] chr7 (2 HSPs)
chr7 (20-180)||(29735488-29735642)
chr7 (89-126)||(8720808-8720845)
[»] chr3 (2 HSPs)
chr3 (20-180)||(49851204-49851350)
chr3 (230-269)||(49851417-49851456)


Alignment Details
Target: chr5 (Bit Score: 149; Significance: 9e-79; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 13869518 - 13869358
Alignment:
Q  20 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13869518 aataacacccaatacagcatgatttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 13869419  T
Q  120 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13869418 cataatttaaacaacaagagaagtttggcgtttctagaattattccaccggtttaagcaaa 13869358  T

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Target: chr5; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 43 - 180
Target Start/End: Complemental strand, 27641129 - 27640992
Alignment:
Q  43 ttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcacaatttaaacaacaagagaag 142  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  27641129 ttagaaacaatctctacatgatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcataatttaaacaacaagagaag 27641030  T
Q  143 tttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    |||||||||||||||||||||||||| |||||||||||    
T  27641029 tttggcgtttctagaattattccaccagtttaagcaaa 27640992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 13869290 - 13869251
Alignment:
Q  230 tgacctgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  13869290 tgacctgtcatgatttcattggatgtttgtaagtgccaca 13869251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 27640925 - 27640886
Alignment:
Q  230 tgacctgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  27640925 tgacctgtcatgatttcattggatgtttgtaagtgccaca 27640886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: scaffold0386
Description:

Target: scaffold0386; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 1055 - 1215
Alignment:
Q  20 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 119  Q
    ||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  1055 aataacacccaatacagcatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatctt 1154  T
Q  120 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  1155 cacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaa 1215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0386; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 741 - 707
Alignment:
Q  235 tgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    ||||| |||||||||||||||||||||||||||||    
T  741 tgtcatgatttcattggatgtttgtaagtgccaca 707  T

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Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 33878898 - 33878738
Alignment:
Q  20 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 119  Q
    ||||||||||||||||||||| |||||||||||||||  ||| ||||||||||||||||||||||||| ||||||| ||| |||||| ||||||||||||    
T  33878898 aataacacccaatacagcatggtttagaaacaatctccgcatgatttggatccgttaattatggtgttgcaatgagtagtcgatgagccataaccatctt 33878799  T
Q  120 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  33878798 cacaatttaaacaacaagagaagtttggagtttctagaattattccacaggtttaagcaaa 33878738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 33878674 - 33878635
Alignment:
Q  230 tgacctgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  33878674 tgacctgtcatgatttcattggatgtttgtaagtgccaca 33878635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 33879203 - 33879237
Alignment:
Q  235 tgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    ||||| |||||||||||||||||||||||||||||    
T  33879203 tgtcacgatttcattggatgtttgtaagtgccaca 33879237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 46673716 - 46673679
Alignment:
Q  89 caatgagcagtggatgagacataaccatcttcacaatt 126  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  46673716 caatgagtagtggatgagtcataaccatcttcacaatt 46673679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 114; Significance: 7e-58; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 38460702 - 38460545
Alignment:
Q  23 aacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatcttcac 122  Q
    ||||||||||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38460702 aacacccaatacaacatggtttagaaacaatctctgcatgatttggatccgttaattatggtgttgcaatgagcagtggatgagacataaccatcttcac 38460603  T
Q  123 aatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    ||||||||||||||||||  ||||| ||||||||| |||||||||  |||||||||||    
T  38460602 aatttaaacaacaagagatatttggagtttctagacttattccacaggtttaagcaaa 38460545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Original strand, 44428121 - 44428158
Alignment:
Q  89 caatgagcagtggatgagacataaccatcttcacaatt 126  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  44428121 caatgagtagtggatgagacataaccatcttcacaatt 44428158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 38460880 - 38460914
Alignment:
Q  235 tgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    ||||| |||||||||||||||||||||||||||||    
T  38460880 tgtcatgatttcattggatgtttgtaagtgccaca 38460914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 29735488 - 29735642
Alignment:
Q  20 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 119  Q
    ||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||      |||||||||||||||||||    
T  29735488 aataacacccaatacagtatggtttagaaacaatctctacatgatttggatccgttaattatggtgttgcaatga------gatgagacataaccatctt 29735581  T
Q  120 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    |||||||||||||||||||| | |||||| ||| ||||||||||||||| |||||||||||    
T  29735582 cacaatttaaacaacaagaggaatttggcatttttagaattattccaccggtttaagcaaa 29735642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 126
Target Start/End: Complemental strand, 8720845 - 8720808
Alignment:
Q  89 caatgagcagtggatgagacataaccatcttcacaatt 126  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  8720845 caatgagtagtggatgagacataaccatcttcacaatt 8720808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 20 - 180
Target Start/End: Original strand, 49851204 - 49851350
Alignment:
Q  20 aataacacccaatacagcatgatttagaaacaatctctacataatttggatccgttaattatggtgttacaatgagcagtggatgagacataaccatctt 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||| ||||||||||||||||||||||||||    
T  49851204 aataacacccaatacagcatgatttagaaacaatctctacataat--------------tatggtgttacaataagcagtggatgagacataaccatctt 49851289  T
Q  120 cacaatttaaacaacaagagaagtttggcgtttctagaattattccacccgtttaagcaaa 180  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  49851290 cacaatttaaacaacaagggaagtttggcgtttctagaattattccaccagtttaagcaaa 49851350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 49851417 - 49851456
Alignment:
Q  230 tgacctgtcaagatttcattggatgtttgtaagtgccaca 269  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  49851417 tgacctgttatgatttcattggatgtttgtaagtgccaca 49851456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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