View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3011_low_3 (Length: 632)

Name: NF3011_low_3
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3011_low_3
NF3011_low_3
[»] chr4 (1 HSPs)
chr4 (11-614)||(49766189-49766792)
[»] chr2 (1 HSPs)
chr2 (57-183)||(14138362-14138488)


Alignment Details
Target: chr4 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 11 - 614
Target Start/End: Original strand, 49766189 - 49766792
Alignment:
Q  11 cacagaagcaataccattagaattagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaa 110  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766189 cacagaagcaataccattagaactagcaactactccctttgatttaccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaa 49766288  T
Q  111 attctttcaaagaaatcaccagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766289 attctttcaaagaaatcaccagagaagcttctgctaccacatccaacagatctagatcttgaaactttacgttcaaaagaacctgtgttgttgctattag 49766388  T
Q  211 gactgttannnnnnnnnnnnnnnnnaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagt 310  Q
    ||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766389 gactgttatcttcttcttcttcttcaacaataacaatgtcgttctttcttcctaaagaagaacctgaacaacacttttccttaagcttagctgaagcagt 49766488  T
Q  311 agtattactaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatct 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766489 agtattactaaagctcttggaagaagttgaagattttgaagaatgatagagaaaagaccaaaacccatttctttttcttggactaaaatattcatcatct 49766588  T
Q  411 gcatcaaccatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgtcgtagcagatgcagaaacagaggttt 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  49766589 gcatcaaccatagagttactacctcttcttggtgttgcagttgatttgctacgtttcaaaatgatattagacgacgtagcagatgcagaaacagaggttt 49766688  T
Q  511 tcttcttctttctcttagctaagagaaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccatgattttcatttttagtaggaca 610  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49766689 tcttcttctttttcttagctaagagaaaaggaatacgagtttttctagaatagtattcatggtggtaatgtttaccatgattttcatttttagtaggaca 49766788  T
Q  611 aaca 614  Q
    ||||    
T  49766789 aaca 49766792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 57 - 183
Target Start/End: Complemental strand, 14138488 - 14138362
Alignment:
Q  57 ccttcacgttgagattcaactcttctgagagtacaatctccaaacccagttgaaattctttcaaagaaatcaccagagaagcttctgctaccacatccaa 156  Q
    ||||||||||||||||| |||||||| |  ||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||    
T  14138488 ccttcacgttgagattccactcttcttaaggtacaatctccaaacccagttgagattttctcaaagaaatcaccagagaagcttctgctaccacatccaa 14138389  T
Q  157 cagatctagatcttgaaactttacgtt 183  Q
    ||||||||||||||||||| |||||||    
T  14138388 cagatctagatcttgaaaccttacgtt 14138362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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