View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_31 (Length: 256)
Name: NF3011_low_31
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 44924421 - 44924207
Alignment:
| Q |
17 |
accttttacttgatgctgcgtgtaagagaacattatttaggctttagctgtttgatattgcttattttgatggtatacccgtgtatccaaccgaaacttt |
116 |
Q |
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| T |
44924421 |
accttttacttgatgctgcgtgtaagagaatattatttag-------ctgtttgatattgcttattttgatggtatacctgtgtatccaaccgaaacttt |
44924329 |
T |
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| Q |
117 |
gatccaactatgcttcatacggtgtaggtctttcctgtgccttttgagaacttataattgtgaaacttgcattaatgatctgcttgatctttatactagt |
216 |
Q |
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| T |
44924328 |
gatccaactatgcttcatatggtgtaggactttcctgtgccttttgagaacttataactgtgaaacttgcattaatgatctgcttgatctttatactagt |
44924229 |
T |
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| Q |
217 |
tagttggatgatatagtctgtg |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
44924228 |
tagttggatgatatagtctgtg |
44924207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 6908445 - 6908338
Alignment:
| Q |
20 |
ttttacttgatgctgcgtgtaagagaacattatttaggctttagctgtttgatattgcttattttgatggtatacccgtgtatccaaccgaaactttgat |
119 |
Q |
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| T |
6908445 |
ttttacttgatgctgtgtgtaagagaatattatttag-------ctgtttgatattgcttgtttttatggtatacccgtgtatccaaccgaaactttgat |
6908353 |
T |
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| Q |
120 |
ccaactatgcttcat |
134 |
Q |
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| T |
6908352 |
ccaactatgcttcat |
6908338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 202539 - 202649
Alignment:
| Q |
17 |
accttttacttgatgctgcgtgtaagagaacattatttaggctttagctgtttgatattgcttattttgatggtatacccgtgtatccaaccgaaacttt |
116 |
Q |
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| T |
202539 |
accttttacttgatgctctgtgtaagagaatattattta-------gctgtttgatattgcttgttttgatggtatacccgtgtatccaaccgaaacttt |
202631 |
T |
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| Q |
117 |
gatccaactatgcttcat |
134 |
Q |
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| T |
202632 |
gatccaactatgcttcat |
202649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 60 - 167
Target Start/End: Original strand, 43632306 - 43632417
Alignment:
| Q |
60 |
ttagctgtttgatattgcttattttgatggtatacccgtgtat----ccaaccgaaactttgatccaactatgcttcatacggtgtaggtctttcctgtg |
155 |
Q |
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| T |
43632306 |
ttagcagtttgattttgcatattttgatggtatacccgtgtatccaaccaaccaaaactttgaatcaactgtgcttcatatggtgtaggtctttcccgtg |
43632405 |
T |
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| Q |
156 |
ccttttgagaac |
167 |
Q |
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| T |
43632406 |
ccttttgcgaac |
43632417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 167
Target Start/End: Complemental strand, 43997894 - 43997781
Alignment:
| Q |
59 |
tttagctgtttgatattgcttattttgatggtataccc-gtgtatccaaccga----aactttgatccaactatgcttcatacggtgtaggtctttcctg |
153 |
Q |
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|||||| ||||||| |||| |||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||| ||||||||||||||| | |
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| T |
43997894 |
tttagcagtttgattttgcatattttgatggtataccccgtgtatccaaccaaccaaaactttgaatcaactatgcttcatatggtgtaggtctttcccg |
43997795 |
T |
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| Q |
154 |
tgccttttgagaac |
167 |
Q |
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| T |
43997794 |
tgccttttgggaac |
43997781 |
T |
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