View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_36 (Length: 243)
Name: NF3011_low_36
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_36 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 243
Target Start/End: Original strand, 2627089 - 2627315
Alignment:
| Q |
16 |
gctttcacatgccaatttaacgagaaatgagaacaaaaccaattagcataagcagtacaaaatatgtgcaagttgcttccaattgtctcctaagccnnnn |
115 |
Q |
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| T |
2627089 |
gctttcacatgccaatttaacgagaaatgagaacaaaaccaattagcataagcagtacaaaatatgtgcaagttgcttccaattgtctcctaagccattt |
2627188 |
T |
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| Q |
116 |
nnnnnnngccattattgattgtcatgaggcacagaaagatctgacaaagttggttctatgcaattttatttccaacttctcatggcttgtgaactttgtg |
215 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2627189 |
tttttt-gccatcattgattgtcatgaggcacagaaagatctgacaaagttggttctatgcaattttatttccaacttctcatggcttgtgaactttgtg |
2627287 |
T |
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| Q |
216 |
atgcctaattcataacttcaatcaacct |
243 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
2627288 |
atgcctaattcataacttcaatcaacct |
2627315 |
T |
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