View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_39 (Length: 235)
Name: NF3011_low_39
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 4224490 - 4224708
Alignment:
| Q |
1 |
cctccaatttgcagtcatcaatatatatagatagataactattgaagtgtggtgttattggttttattttttggtacacaaaggggactagtgttactga |
100 |
Q |
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| T |
4224490 |
cctccaatttgcagtcatcaatatatatagatagataactattgaagtgtggtgttattggttttattttttggtacacaaaggggactagtgttactga |
4224589 |
T |
|
| Q |
101 |
tttttgatcaaggtaaaatatcacagagtacactaatacaacttcaactattttgagtgttagtgataattggaagcattttcagtagccttcccaatgt |
200 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4224590 |
tttttgatcaaggtaaaatat--cagagtacactaatacaagttcaactattttgggtgttagtgataactggaagcattttcagtagccttcccaatgt |
4224687 |
T |
|
| Q |
201 |
gtgaactacctaggttgatat |
221 |
Q |
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||||||||||||||||||||| |
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| T |
4224688 |
gtgaactacctaggttgatat |
4224708 |
T |
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