View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3011_low_9 (Length: 432)
Name: NF3011_low_9
Description: NF3011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3011_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Complemental strand, 43921778 - 43921347
Alignment:
| Q |
10 |
gtgagatgaatgtgaatggttagttaaagttaaatcaacttcatttttgaatcttgattaattatgagcaaattatattgggacgattttcatttacatg |
109 |
Q |
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| T |
43921778 |
gtgaaatgaatgtgaatggttagttaaagttaaatcaacttcatttttgaatcttgattaattatgagcaaattatattggaacgattttcatttacatg |
43921679 |
T |
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| Q |
110 |
gactaattatcattattttcggattaaagtaaaattgttagaagttttatattgagtagacaaaaatgttcaatatacttctttaagctaggaaactctc |
209 |
Q |
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| T |
43921678 |
gactaattatcattattttcggattaaagtaaaattgttagaagttttatattgagtagacaaattttttcaatatacttctttaagttaggagactctc |
43921579 |
T |
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| Q |
210 |
acctaatcgactagnnnnnnngggtttgactct---------cttcatatgcttaagtcataatataaatcaattgcacggttgattgtgcattggatta |
300 |
Q |
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| T |
43921578 |
acttaatcgactagtttttttgggtttgactctcttcgtatgcttcatatgcttaagtcataatataaatcaattgcacgtttgattgtgcattggatta |
43921479 |
T |
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| Q |
301 |
gctagttcctgcaagataaatgtatatagattacttctattactcatcaataaattaagttcaattgaagtatatcgctgttaatcaagtagcattttta |
400 |
Q |
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| T |
43921478 |
gctagttcctgcaagatcaatgtatatagattacttctattactcatcaatgaattaagttcaattgaaatagatcgctgttaatcaagtagcattttga |
43921379 |
T |
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| Q |
401 |
aaaggacacatacatagtcatagaatgcatga |
432 |
Q |
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| T |
43921378 |
aaaggacacatacatagtcatagaatgcatga |
43921347 |
T |
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