View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_high_13 (Length: 350)
Name: NF3013_high_13
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_high_13 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 11787881 - 11787549
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattcattaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11787881 |
gagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggcagcatagccgacaacgttaacaagcctagtccctgcaattcattaa |
11787782 |
T |
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| Q |
111 |
aacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaagagt |
210 |
Q |
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| T |
11787781 |
aacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaagagt |
11787682 |
T |
|
| Q |
211 |
ttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtattgatgaagtgactatgccacacttacaacattgcaacgacacaaagatt |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
11787681 |
ttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtatagatgaagtgactataccacacttacaacattgcaacgacacaaagatt |
11787582 |
T |
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| Q |
311 |
gtggtgaagaaaagttgaaaaaacaggtgatta |
343 |
Q |
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| T |
11787581 |
gtggtgaagaaaagttggaaaaacaggtgatta |
11787549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 11 - 343
Target Start/End: Complemental strand, 11800048 - 11799716
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattcattaa |
110 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11800048 |
gagatgaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggcagcatagccgacaacgttaacaagcctagtccctgcaattcattaa |
11799949 |
T |
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| Q |
111 |
aacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaagagt |
210 |
Q |
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| T |
11799948 |
aacaatgagtcaatgataacttgtgactggttttggatatctgaatgtcttcccactacttccatgtctgttttgatgaatggaagacttgcaaaagagt |
11799849 |
T |
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| Q |
211 |
ttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtattgatgaagtgactatgccacacttacaacattgcaacgacacaaagatt |
310 |
Q |
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| T |
11799848 |
ttccggcgagaaggggaatcagacaaggatagccgttatccagtttggtatagatgaagtgactataccacacttacaacattgcaacgacacaaagatt |
11799749 |
T |
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| Q |
311 |
gtggtgaagaaaagttgaaaaaacaggtgatta |
343 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
11799748 |
gtggtgaagaaaagttggaaaaacaggtgatta |
11799716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 11784050 - 11783951
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattcattaa |
110 |
Q |
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|||||||||||||| || |||||||||||||||||| ||| ||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
11784050 |
gagaagaagaataacattacttgtgactgaggagaataaattgtaatggaaggcagcatagccgacaatgttaacaagcctagtccctgcaaatcattaa |
11783951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 11697863 - 11697767
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctgcaattcat |
107 |
Q |
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|||| |||||||||||| |||||||| |||| ||||||| |||||| |||||||||||||| || || |||||||||||||||||||| ||||||| |
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| T |
11697863 |
gagatgaagaataagattacttgtgattgagtagaacaagatgtgagtgaaggaagcatagctgataatgttaacaagcctagtccctgtaattcat |
11697767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 11707571 - 11707483
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg |
99 |
Q |
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|||| |||||||||||| |||||||| ||||||||||||||||||| ||||| |||| ||| || || |||||||||||||||||||| |
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| T |
11707571 |
gagatgaagaataagattacttgtgattgaggagaacaaaatgtgagtgaagggagcaaagctgataatgttaacaagcctagtccctg |
11707483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 11676348 - 11676260
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg |
99 |
Q |
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|||| ||| |||||||| |||||||||| ||||||||| |||||| |||||||||||||| || || |||||||||||||||||||| |
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| T |
11676348 |
gagatgaaaaataagattacttgtgactcaggagaacaggatgtgagagaaggaagcatagctgataatgttaacaagcctagtccctg |
11676260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 99
Target Start/End: Complemental strand, 11684627 - 11684539
Alignment:
| Q |
11 |
gagaagaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg |
99 |
Q |
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|||| ||| |||||||| |||||||||| ||||||||| |||||| |||||||||||||| || || |||||||||||||||||||| |
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| T |
11684627 |
gagatgaaaaataagattacttgtgactcaggagaacaggatgtgagagaaggaagcatagctgataatgttaacaagcctagtccctg |
11684539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 19630 - 19547
Alignment:
| Q |
16 |
gaagaataagataacttgtgactgaggagaacaaaatgtgatggaaggaagcatagccgacaacgttaacaagcctagtccctg |
99 |
Q |
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|||||||||||| |||||||| |||| ||||||| ||| || |||||||| |||| || | |||||||||||||||||||| |
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| T |
19630 |
gaagaataagattacttgtgattgagtagaacaagatgcgagtgaaggaagaatagttgatagtgttaacaagcctagtccctg |
19547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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