View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_high_14 (Length: 335)

Name: NF3013_high_14
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_high_14
NF3013_high_14
[»] chr3 (19 HSPs)
chr3 (6-220)||(21088457-21088670)
chr3 (50-326)||(23465328-23465604)
chr3 (5-326)||(23474293-23474613)
chr3 (48-326)||(23406672-23406950)
chr3 (50-279)||(23353825-23354054)
chr3 (50-326)||(23449195-23449471)
chr3 (5-326)||(23441761-23442081)
chr3 (49-326)||(23455958-23456235)
chr3 (50-326)||(23480685-23480961)
chr3 (64-326)||(23435407-23435669)
chr3 (50-326)||(23500958-23501234)
chr3 (48-326)||(23388312-23388590)
chr3 (48-278)||(21087310-21087540)
chr3 (48-279)||(36025390-36025618)
chr3 (50-236)||(36004631-36004817)
chr3 (73-227)||(36017317-36017471)
chr3 (277-326)||(21086891-21086940)
chr3 (73-231)||(36034223-36034385)
chr3 (48-209)||(36009677-36009838)
[»] scaffold0201 (1 HSPs)
scaffold0201 (48-279)||(13500-13731)
[»] scaffold0570 (2 HSPs)
scaffold0570 (48-326)||(9562-9840)
scaffold0570 (56-148)||(3305-3397)
[»] chr2 (3 HSPs)
chr2 (73-231)||(16334662-16334820)
chr2 (73-231)||(16124831-16124989)
chr2 (73-231)||(16126984-16127142)
[»] chr4 (1 HSPs)
chr4 (73-241)||(12894610-12894778)
[»] scaffold0022 (1 HSPs)
scaffold0022 (91-216)||(167562-167687)
[»] chr8 (2 HSPs)
chr8 (88-130)||(11125522-11125564)
chr8 (101-138)||(6097893-6097930)


Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 6 - 220
Target Start/End: Original strand, 21088457 - 21088670
Alignment:
Q  6 agtctgcttcttcatatgtaatggatctattttgtnnnnnnncaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcatt 105  Q
    |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21088457 agtctgcttcttcatatgtaatggatctattttgtaaaaaa-caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcatt 21088555  T
Q  106 caaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctcct 205  Q
    ||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  21088556 caagcaccattttgaggaagcatagttttctgaaaagataacaatagatacacgtgactcctcaatagcttcgatgaatgctggcgagatctcgtctcct 21088655  T
Q  206 tttttaagctcgttg 220  Q
    |||||||||||||||    
T  21088656 tttttaagctcgttg 21088670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23465328 - 23465604
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  23465328 ggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23465427  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||||    
T  23465428 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcg 23465527  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     ||||||||  | ||||||||||| |||||  | ||| ||||||| |||    ||||||| |||||||| |||||||    
T  23465528 gctcagagcgtcgtaaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacctcatatt 23465604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 23474293 - 23474613
Alignment:
Q  5 cagtctgcttcttcatatgtaatggatctattttgtnnnnnnncaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcat 104  Q
    ||||||||||| ||| |||| |||||||||| ||||       ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  23474293 cagtctgcttcctcacatgtgatggatctatgttgtaaaaaa-caggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcat 23474391  T
Q  105 tcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctcc 204  Q
    |||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||  |||||||||||| |||  ||||| ||||||||| ||||  |||||    
T  23474392 tcaagcaccattttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcc 23474491  T
Q  205 ttttttaagctcgttgtcatctataaaggttaaaactatgcttcgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatga 304  Q
    ||||| |||||| ||||  ||||||||||||  |||| |  |||| ||||||||| |||||||||||| ||||||  | ||| | ||||| |||    ||    
T  23474492 tttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcga 23474591  T
Q  305 aagctgagaaaaacgtcatatt 326  Q
    ||||| ||||||||||||||||    
T  23474592 aagctaagaaaaacgtcatatt 23474613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 48 - 326
Target Start/End: Original strand, 23406672 - 23406950
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||||||||||||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||    
T  23406672 caggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgac 23406771  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||| ||  || | |  ||    
T  23406772 aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaagattttaattttcttt 23406871  T
Q  248 cgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    || ||||||||  ||||||||||||| |||||  | ||| ||||||| |||    ||||||| |||||||| |||||||    
T  23406872 cggctcagagcgtcataaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacttcatatt 23406950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 50 - 279
Target Start/End: Original strand, 23353825 - 23354054
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  23353825 ggtatcacaatctgttacatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23353924  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||||    
T  23353925 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactgtctttcg 23354024  T
Q  250 actcagagcagcataaagatggcttgtgaa 279  Q
     || |||||| ||||||||||||| |||||    
T  23354025 gcttagagcatcataaagatggctcgtgaa 23354054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23449195 - 23449471
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    |||||||||||||||| |||| |||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| ||||    
T  23449195 ggtatcacaatctgttgcatatatttcttgcattcaagaatctttttgagctcattcaagcaccattttgaggaagcatagttttctgagaagatgacaa 23449294  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||  |||||| ||||  |||||||| |||  |||| |  ||||    
T  23449295 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctccttttcgaagctcattgttgtctataaatgtttcaactttctttcg 23449394  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     |||| |||| ||||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23449395 gctcaaagcatcataaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt 23449471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 5 - 326
Target Start/End: Original strand, 23441761 - 23442081
Alignment:
Q  5 cagtctgcttcttcatatgtaatggatctattttgtnnnnnnncaggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcat 104  Q
    ||||||||||| ||| |||| |||||||||| ||||       ||||||||||||||||| ||||| |||||||||||||  ||||||||||||||||||    
T  23441761 cagtctgcttcctcacatgtgatggatctatgttgtaaaaaa-caggtatcacaatctgtaccatatatttcttgcattcaagaatctttttgagctcat 23441859  T
Q  105 tcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctcc 204  Q
    |||| ||||||||||||||||||||| ||||||| ||||| |||||||| |||  |||||||||||| |||  ||||| ||||||||| ||||  |||||    
T  23441860 tcaagcaccattttgaggaagcatagttttctgagaagatgacaatagacacatgtgactcctcaatggctctgatgagtgctggcgatatcttatctcc 23441959  T
Q  205 ttttttaagctcgttgtcatctataaaggttaaaactatgcttcgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatga 304  Q
    ||||| |||||| ||||  ||||||||||||  |||| |  |||| ||| ||||| |||||||||||| ||||||  | ||| | ||||| |||    ||    
T  23441960 tttttgaagctcattgttgtctataaaggtttcaactttctttcggctccgagcatcataaagatggcatgtgaagtttctgcgggtatcctcacctcga 23442059  T
Q  305 aagctgagaaaaacgtcatatt 326  Q
    ||||| ||||||||||||||||    
T  23442060 aagctaagaaaaacgtcatatt 23442081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 49 - 326
Target Start/End: Original strand, 23455958 - 23456235
Alignment:
Q  49 aggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataaca 148  Q
    ||||||||| |||||||||||| ||| |||||||||| ||||||||||||| |||||||||||||||||||||||||| ||| ||||||| ||||| |||    
T  23455958 aggtatcacgatctgttccatatattgcttgcattctagaatctttttgagatcattcaaacaccattttgaggaagcgtagttttctgagaagatgaca 23456057  T
Q  149 atagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttc 248  Q
    ||||| |||  |||||||||||| | || ||||| || ||| |||||||| |||||||||| ||| || ||||  ||||| ||||||  |||| |  |||    
T  23456058 atagacacatgtgactcctcaatggttttgatgagtgttggtgagatctcatctcctttttgaaggtcattgttgtctatgaaggtttcaactttctttc 23456157  T
Q  249 gactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    |||||| |||| |||||||||||||||||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23456158 gactcaaagcatcataaagatggcttgtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt 23456235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23480685 - 23480961
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    ||||||||||| |||||| || |||||||||||||  ||||||| |||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||    
T  23480685 ggtatcacaatgtgttccttatatttcttgcattcaagaatcttcttgagctcattcaagcaccattttgaagaagcatagttttctgagaagatgacaa 23480784  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  ||||| |||||| |||| ||||| ||||||||||||||| |||||||||| |||||  ||||  ||||||||||||  |||| |  ||||    
T  23480785 tagatgcatgtgacttctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagcttattgttgtctataaaggtttcaactttctttcg 23480884  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     ||||||||| ||||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23480885 gctcagagcatcataaagatggctggtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaacgtcatatt 23480961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 64 - 326
Target Start/End: Original strand, 23435407 - 23435669
Alignment:
Q  64 ttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgac 163  Q
    ||||||| ||| |||||||||| ||||||||||||||||||| || ||||||||||| ||||||||| ||||||| ||||| ||||||||| ||  ||||    
T  23435407 ttccatatattgcttgcattctagaatctttttgagctcatttaagcaccattttgaagaagcatagttttctgagaagatgacaatagatgcatgtgac 23435506  T
Q  164 tcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcgactcagagcagcat 263  Q
    |||||||| |||| ||||| ||||||||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  |||| ||||||||| |||    
T  23435507 tcctcaatggctttgatgagtgctggcgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcggctcagagcatcat 23435606  T
Q  264 aaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    ||||||||| ||||||  | ||| | ||||| |||    ||||||| ||||||||||||||||    
T  23435607 aaagatggcatgtgaagtttctgcgggtatcctcacctcgaaagctaagaaaaacgtcatatt 23435669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 50 - 326
Target Start/End: Original strand, 23500958 - 23501234
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    |||||||||||||| |||||| ||||||| |||||  |||||||||||||||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||    
T  23500958 ggtatcacaatctgctccatatatttcttacattcaagaatctttttgagctcattcaagcaccattttgacgaagcatagttttctgagaagatgacaa 23501057  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgcttcg 249  Q
    ||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||||    
T  23501058 tagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtctataaaggtttcaactttctttcg 23501157  T
Q  250 actcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
     ||||||||  | ||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||| ||||||||    
T  23501158 gctcagagcgtcgtaaagatggctagtgaagtttctgcgagtatcctcacctcgaaagctaagaaaaatgtcatatt 23501234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 48 - 326
Target Start/End: Original strand, 23388312 - 23388590
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    |||||||||||||||||| |||| ||||||||||||   ||||||| |||||||||||||| ||||||||||||||||||||  ||||||| ||||| |     
T  23388312 caggtatcacaatctgttgcatatatttcttgcattgaagaatcttcttgagctcattcaagcaccattttgaggaagcataattttctgagaagatgat 23388411  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||| || ||   |||||||||||| |||| ||||| |||||| |||||||| |||||||||| |||||| ||||  ||||||||||||  |||| |  ||    
T  23388412 aattgacacgtgtgactcctcaatggctttgatgagtgctggtgagatctcatctcctttttcaagctcattgttgtctataaaggtttcaacttttttt 23388511  T
Q  248 cgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    || ||||||| | ||||||||||||| |||||  | ||| ||||||| |||    ||||||| ||||||||||||||||    
T  23388512 cggctcagagtatcataaagatggctcgtgaagtttctgcgagtatcatcacctcgaaagctaagaaaaacgtcatatt 23388590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 278
Target Start/End: Original strand, 21087310 - 21087540
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||| |||||| || |||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||||  |    
T  21087310 caggtatcacaatttgttccttatatttcttgcattctagaatctttttgagctcattcaagcaccattttgaggaagcgtagttttctgagaagatgtc 21087409  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||| ||| ||  |||||| ||||| |||| ||||| | |||| | |||||  ||||||||||||||||  ||||  ||||||||||||  |||  |  ||    
T  21087410 aatcgatgcatgtgactcttcaatggctttgatgagttctggtgtgatcttatctccttttttaagcttattgttgtctataaaggtttgaacattattt 21087509  T
Q  248 cgactcagagcagcataaagatggcttgtga 278  Q
     | ||||||||| ||||||||||||||||||    
T  21087510 tggctcagagcatcataaagatggcttgtga 21087540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 36025390 - 36025618
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||||||| |  ||  ||||||||||||| |||||||   ||| |||||||| |||||||||||||||||||||  || ||| ||||| ||    
T  36025390 caggtatcacaatctgtccattatctttcttgcattctagaatcttgacgagttcattcaagcaccattttgaggaagcatagtcttttgagaagatgac 36025489  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
     |||||| || | |||| ||||||||||| ||| | ||||| |||||||||||||||||||| |||||| |||||||||||||| |||| |||| | |||    
T  36025490 gatagatgcagacgacttctcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgttataact-ttctt 36025588  T
Q  248 cgactcagagcagcataaagatggcttgtgaa 279  Q
       ||||||||  |||||||||||||||||||    
T  36025589 --gctcagagcttcataaagatggcttgtgaa 36025618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 50 - 236
Target Start/End: Original strand, 36004631 - 36004817
Alignment:
Q  50 ggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaa 149  Q
    ||||||||||||||| ||  |  |||||| |||||| |||||||   ||| |||||||| ||||||||||||||||| |||  || ||| ||||| || |    
T  36004631 ggtatcacaatctgtccctgatctttcttacattctagaatcttgacgagttcattcaagcaccattttgaggaagcgtagtcttttgagaagatgacga 36004730  T
Q  150 tagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggtta 236  Q
    ||||| || | || || |||||||||| ||| | ||||| |||||||||||||||||||| |||||| |||||||||||||| ||||    
T  36004731 tagatgcagacgaatcttcaatagctttgatcagtgctgacgagatctcgtctcctttttcaagctcattgtcatctataaatgtta 36004817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 73 - 227
Target Start/End: Original strand, 36017317 - 36017471
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||| || ||||| || |||||||||  ||  || || || || |||||| ||  ||||||||||||     
T  36017317 tttcttgcattctagaatcttgacgagttcattcaagcatcatttagaagaagcatagtctttcgagaatatgactatagatgcatctgactcctcaatg 36017416  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatcta 227  Q
    |||| ||| | |||||  ||||||||||||||||||| ||||||| |||||||||    
T  36017417 gctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcatcta 36017471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 277 - 326
Target Start/End: Complemental strand, 21086940 - 21086891
Alignment:
Q  277 gaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  21086940 gaatgtactgcgagtatcctcattatgaaagctgagaaaaacgtcatatt 21086891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 36034223 - 36034385
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaata----gatacacatgactcctc 168  Q
    ||||||||||||| |||||||   ||| ||||||||| |||||||||| |||||||||  || ||| || || |  |||    ||| ||  |||||||||    
T  36034223 tttcttgcattctagaatcttgacgagttcattcaaataccattttgaagaagcatagtcttttgagaatatgaatatatagagatgcatctgactcctc 36034322  T
Q  169 aatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    ||| |||| ||| | |||||  ||||||||||||||||||| ||||||| |||| ||||||||    
T  36034323 aatggctttgatcagtgctgatgagatctcgtctcctttttcaagctcgctgtcgtctataaa 36034385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 209
Target Start/End: Original strand, 36009677 - 36009838
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||| ||| ||| |  ||| ||||||||| |||| ||   ||| |||||||| ||||||||||| ||||||||   || ||||||||| ||    
T  36009677 caggtatcacaatttgtcccaaatcttttttgcattctagaattttgacgagttcattcaagcaccattttgaagaagcataatcttttgaaaagatgac 36009776  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttt 209  Q
     ||||||    ||||||||||||| |||| ||| | || ||  || ||||| ||||||||||    
T  36009777 tatagatgtgtatgactcctcaatggctttgattagtgatgatgatatctcatctccttttt 36009838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 48 - 279
Target Start/End: Original strand, 13500 - 13731
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    ||||||||||||||||||||||| |||||||||||||  ||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||| ||    
T  13500 caggtatcacaatctgttccatatatttcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagatgac 13599  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  || |||||||||  || | |  ||    
T  13600 aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttcttt 13699  T
Q  248 cgactcagagcagcataaagatggcttgtgaa 279  Q
    ||  |||||||| |||||||||||||| ||||    
T  13700 cggatcagagcatcataaagatggcttctgaa 13731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 326
Target Start/End: Complemental strand, 9840 - 9562
Alignment:
Q  48 caggtatcacaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataac 147  Q
    |||||||||| |||||||||||| ||| |||||||||  ||||||||||||||||||| || ||||||||||||||||||||| ||||||| ||||| ||    
T  9840 caggtatcaccatctgttccatatattgcttgcattcaagaatctttttgagctcatttaagcaccattttgaggaagcatagttttctgagaagattac 9741  T
Q  148 aatagatacacatgactcctcaatagcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaactatgctt 247  Q
    ||||||| ||  |||||||||||| |||| ||||| ||||| ||||||||| |||||||||| |||||| ||||  || |||||||||  || | |  ||    
T  9740 aatagatgcatgtgactcctcaatggctttgatgagtgctgccgagatctcatctcctttttgaagctcattgttgtccataaaggtttcaattttcttt 9641  T
Q  248 cgactcagagcagcataaagatggcttgtgaatgtactgagagtatcttcattatgaaagctgagaaaaacgtcatatt 326  Q
    || ||||||||| |||||||||||||||| ||  | ||| ||||||| |||    ||||||| ||||||| ||||||||    
T  9640 cggctcagagcatcataaagatggcttgttaagtttctgcgagtatcctcacctcgaaagctaagaaaaatgtcatatt 9562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0570; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 3397 - 3305
Alignment:
Q  56 acaatctgttccataaatttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataaca 148  Q
    ||||||||||||||| |||||| |||||||  ||||||||||||||||||||| || |||||||||||||||||| ||| ||| |||||||||    
T  3397 acaatctgttccatatatttctagcattctataatctttttgagctcattcaagcatcattttgaggaagcatagttttatgagaagataaca 3305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 73 - 231
Target Start/End: Complemental strand, 16334820 - 16334662
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||| ||||||||| ||||||| ||||| || |||||| |||||||||| |||||     
T  16334820 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagttttctgataagatgactatagatgcacatgactcttcaatg 16334721  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    |||| ||| | |||||  |||||||| ||||||||||||||||||||||||||||||||    
T  16334720 gctttgatcagtgctgatgagatctcatctccttttttaagctcgttgtcatctataaa 16334662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 16124831 - 16124989
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||| |||||||||  |||||||||||| || |||||| |||||||||| |||||     
T  16124831 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatg 16124930  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    |||| ||| | |||||  |||||||| |||||||||||||||||| |||| ||||||||    
T  16124931 gctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa 16124989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 231
Target Start/End: Original strand, 16126984 - 16127142
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| |||||||||||||||||||| |||||||||  |||||||||||| || |||||| |||||||||| |||||     
T  16126984 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaagaagcatagtcttctgaaaagatgactatagatgcacatgactcttcaatg 16127083  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaa 231  Q
    |||| ||| | |||||  |||||||| |||||||||||||||||| |||| ||||||||    
T  16127084 gctttgatcagtgctgatgagatctcatctccttttttaagctcgctgtcgtctataaa 16127142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 73 - 241
Target Start/End: Complemental strand, 12894778 - 12894610
Alignment:
Q  73 tttcttgcattcttgaatctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaata 172  Q
    ||||||||||||| |||||||   ||| ||||||||||||||||||||||||||||||  |  ||| ||||| ||||||||| || |||||||||||||     
T  12894778 tttcttgcattctagaatcttgacgagttcattcaaacaccattttgaggaagcatagtctattgagaagatgacaatagatgcatatgactcctcaatg 12894679  T
Q  173 gcttcgatgaatgctggcgagatctcgtctccttttttaagctcgttgtcatctataaaggttaaaact 241  Q
    |||| ||| |||||||  || ||||| |||||||||| |||||| ||||||||||||||||||| ||||    
T  12894678 gctttgatcaatgctgaggatatctcatctcctttttgaagctcattgtcatctataaaggttataact 12894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 91 - 216
Target Start/End: Complemental strand, 167687 - 167562
Alignment:
Q  91 ctttttgagctcattcaaacaccattttgaggaagcatagatttctgaaaagataacaatagatacacatgactcctcaatagcttcgatgaatgctggc 190  Q
    |||||||| ||||||||| ||||||| ||||||||||||| ||||||| ||||| ||||||||| ||  | |||||||||| |||| ||||| || ||||    
T  167687 ctttttgatctcattcaagcaccattatgaggaagcatagttttctgagaagatgacaatagatgcatgttactcctcaatggctttgatgagtgttggc 167588  T
Q  191 gagatctcgtctccttttttaagctc 216  Q
    |||||||| |||||||||| ||||||    
T  167587 gagatctcatctcctttttgaagctc 167562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 11125522 - 11125564
Alignment:
Q  88 aatctttttgagctcattcaaacaccattttgaggaagcatag 130  Q
    ||||||||| ||||||| |||||||||| ||||||||||||||    
T  11125522 aatcttttttagctcatccaaacaccatgttgaggaagcatag 11125564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 6097893 - 6097930
Alignment:
Q  101 tcattcaaacaccattttgaggaagcatagatttctga 138  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  6097893 tcatccaaacaccattttgaggaagcatagttttctga 6097930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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