View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_high_26 (Length: 245)

Name: NF3013_high_26
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_high_26
NF3013_high_26
[»] chr3 (4 HSPs)
chr3 (1-114)||(9245939-9246052)
chr3 (174-229)||(9246087-9246142)
chr3 (19-52)||(34073316-34073349)
chr3 (20-49)||(51569885-51569914)
[»] chr5 (2 HSPs)
chr5 (5-57)||(39735398-39735450)
chr5 (19-51)||(38701154-38701186)
[»] chr7 (2 HSPs)
chr7 (19-51)||(33872794-33872826)
chr7 (19-51)||(43735748-43735780)
[»] chr4 (2 HSPs)
chr4 (11-51)||(29086315-29086355)
chr4 (19-51)||(6478469-6478501)
[»] chr1 (6 HSPs)
chr1 (14-57)||(3780365-3780408)
chr1 (19-57)||(31283797-31283835)
chr1 (22-51)||(23362151-23362180)
chr1 (7-51)||(2783561-2783604)
chr1 (19-51)||(40009030-40009062)
chr1 (19-51)||(45443436-45443468)
[»] chr2 (2 HSPs)
chr2 (7-57)||(25726934-25726983)
chr2 (23-51)||(24742903-24742931)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 114
Target Start/End: Original strand, 9245939 - 9246052
Alignment:
Q  1 aagtcgaacaaataagttaatattaatctaacaaactaactactaacatttttcatttnnnnnnncactcatgttcaatcaatttagcattttcccattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||       |||||||||||||||||||||||||||||||||||    
T  9245939 aagtcgaacaaataagttaatattaatctaacaaactaactactaacatttaccatttaaaaaaacactcatgttcaatcaatttagcattttcccattt 9246038  T
Q  101 aaatgaaaacaatt 114  Q
    ||||||||||||||    
T  9246039 aaatgaaaacaatt 9246052  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 9246087 - 9246142
Alignment:
Q  174 ttgacaaatgctgcatgcaatttcttcagtgtgtaactattttctttccttagatt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9246087 ttgacaaatgctgcatgcaatttcttcagtgtgtaactattttctttccttagatt 9246142  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 34073349 - 34073316
Alignment:
Q  19 aatattaatctaacaaactaactactaacatttt 52  Q
    |||||||||||||||||||||||| |||||||||    
T  34073349 aatattaatctaacaaactaactattaacatttt 34073316  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 51569885 - 51569914
Alignment:
Q  20 atattaatctaacaaactaactactaacat 49  Q
    ||||||||||||||||||||||||||||||    
T  51569885 atattaatctaacaaactaactactaacat 51569914  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 39735450 - 39735398
Alignment:
Q  5 cgaacaaataagttaatattaatctaacaaactaactactaacatttttcatt 57  Q
    ||||||||| ||| ||||||||| ||||||||||||||||||||||| |||||    
T  39735450 cgaacaaatgagtaaatattaatataacaaactaactactaacatttgtcatt 39735398  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 38701186 - 38701154
Alignment:
Q  19 aatattaatctaacaaactaactactaacattt 51  Q
    |||||||||||||||||||| ||||||||||||    
T  38701186 aatattaatctaacaaactatctactaacattt 38701154  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 33872826 - 33872794
Alignment:
Q  19 aatattaatctaacaaactaactactaacattt 51  Q
    |||||||||||||||||||||||||||||||||    
T  33872826 aatattaatctaacaaactaactactaacattt 33872794  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 43735780 - 43735748
Alignment:
Q  19 aatattaatctaacaaactaactactaacattt 51  Q
    |||||||||||||||||||| ||||||||||||    
T  43735780 aatattaatctaacaaactagctactaacattt 43735748  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 29086315 - 29086355
Alignment:
Q  11 aataagttaatattaatctaacaaactaactactaacattt 51  Q
    ||||||| ||||||||||||||||| |||||||||||||||    
T  29086315 aataagtaaatattaatctaacaaattaactactaacattt 29086355  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 6478469 - 6478501
Alignment:
Q  19 aatattaatctaacaaactaactactaacattt 51  Q
    |||||||||||||||||||||||||||| ||||    
T  6478469 aatattaatctaacaaactaactactaatattt 6478501  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 14 - 57
Target Start/End: Original strand, 3780365 - 3780408
Alignment:
Q  14 aagttaatattaatctaacaaactaactactaacatttttcatt 57  Q
    |||| |||||||||||||||||| ||| ||||||||||||||||    
T  3780365 aagtaaatattaatctaacaaacaaaccactaacatttttcatt 3780408  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 31283797 - 31283835
Alignment:
Q  19 aatattaatctaacaaactaactactaacatttttcatt 57  Q
    |||||||||||||||||||||||||||| |||| |||||    
T  31283797 aatattaatctaacaaactaactactaatatttgtcatt 31283835  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 51
Target Start/End: Original strand, 23362151 - 23362180
Alignment:
Q  22 attaatctaacaaactaactactaacattt 51  Q
    ||||||||||||||||||||||||||||||    
T  23362151 attaatctaacaaactaactactaacattt 23362180  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 51
Target Start/End: Original strand, 2783561 - 2783604
Alignment:
Q  7 aacaaataagttaatattaatctaacaaactaactactaacattt 51  Q
    ||||||| ||| ||||||||||||||||| |||||||||||||||    
T  2783561 aacaaatgagtaaatattaatctaacaaa-taactactaacattt 2783604  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 40009062 - 40009030
Alignment:
Q  19 aatattaatctaacaaactaactactaacattt 51  Q
    |||||||||||||||||||||||||| ||||||    
T  40009062 aatattaatctaacaaactaactactcacattt 40009030  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 45443468 - 45443436
Alignment:
Q  19 aatattaatctaacaaactaactactaacattt 51  Q
    ||||||||||||||||||||| |||||||||||    
T  45443468 aatattaatctaacaaactaattactaacattt 45443436  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 25726983 - 25726934
Alignment:
Q  7 aacaaataagttaatattaatctaacaaactaactactaacatttttcatt 57  Q
    ||||||| ||| ||||||||||||||||  |||||||||||||||||||||    
T  25726983 aacaaatgagtaaatattaatctaacaat-taactactaacatttttcatt 25726934  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 51
Target Start/End: Complemental strand, 24742931 - 24742903
Alignment:
Q  23 ttaatctaacaaactaactactaacattt 51  Q
    |||||||||||||||||||||||||||||    
T  24742931 ttaatctaacaaactaactactaacattt 24742903  T

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