View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_high_32 (Length: 236)
Name: NF3013_high_32
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_high_32 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 61 - 236
Target Start/End: Original strand, 26782539 - 26782714
Alignment:
| Q |
61 |
gtaattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgctt |
160 |
Q |
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| T |
26782539 |
gtaattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggaggaagaaagcaattgctt |
26782638 |
T |
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| Q |
161 |
gcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggaggtagaatcc |
236 |
Q |
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| T |
26782639 |
gcatatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggaggtagaatcc |
26782714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 26829217 - 26829384
Alignment:
| Q |
69 |
tgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgcatatat |
168 |
Q |
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| T |
26829217 |
tgaatgaagtattgccaatgccaagttcttctaggagttgggaacaaaagtgccaacatatccaaatgccatgatgaagaaagcaaacgcttggatgtat |
26829316 |
T |
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| Q |
169 |
aggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggaggtagaatcc |
236 |
Q |
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| T |
26829317 |
aggaatatgaagaagtgatttttcccatacataagatcatagcagccacataagaggaggtagaatcc |
26829384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 26815689 - 26815862
Alignment:
| Q |
63 |
aattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgc |
162 |
Q |
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| T |
26815689 |
aattggtgaatggagtactgccaatgccaaattcttctatgagttaggaacaaaagtgccaacatatccaaatgccacgatgagaaaagcagtcgcttgc |
26815788 |
T |
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| Q |
163 |
atatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggaggtagaatcc |
236 |
Q |
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| T |
26815789 |
atgtataggaatatgaagaagtaatttttcccatacataaaatcatagcagccacaaaataggaggtagaatcc |
26815862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 63 - 236
Target Start/End: Original strand, 26788852 - 26789025
Alignment:
| Q |
63 |
aattgatgaatgaagtattgtgaatgccaagttctgctaggagttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgc |
162 |
Q |
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| T |
26788852 |
aattggtgaataaagtattgccaatgccaagttcttctaggagttagaaacaaaagtgccaacgtatccaaatgccaggatgaagaaagcaatagcttga |
26788951 |
T |
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| Q |
163 |
atatataggaatatgtagtagtaatttttcccatacataagatcatagcagccacaaaataggaggtagaatcc |
236 |
Q |
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| T |
26788952 |
atgtataagaatatgaagaattgatttttcccatgcataagatcatagcaaccacaaaatagaaggtagaatcc |
26789025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 215
Target Start/End: Complemental strand, 41921426 - 41921315
Alignment:
| Q |
104 |
agttgggaacaaaagttccaacatatccaaaggccaggatgaagaaagcaattgcttgcatatataggaatatgtagtagtaatttttcccatacataag |
203 |
Q |
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| T |
41921426 |
agttgggaacgaaggttccgacatatccaaatgccatgatgaagaaggcgattgcttggataaagagaaagatgaagaagtggtttttcccaaacatgac |
41921327 |
T |
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| Q |
204 |
atcatagcagcc |
215 |
Q |
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| T |
41921326 |
atcgtagcagcc |
41921315 |
T |
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