View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_high_36 (Length: 220)

Name: NF3013_high_36
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_high_36
NF3013_high_36
[»] chr4 (6 HSPs)
chr4 (91-205)||(22445573-22445687)
chr4 (19-68)||(22445756-22445805)
chr4 (118-202)||(5398586-5398670)
chr4 (118-188)||(27634192-27634262)
chr4 (118-202)||(28245637-28245721)
chr4 (118-202)||(35796853-35796937)
[»] chr7 (5 HSPs)
chr7 (118-205)||(36277102-36277189)
chr7 (123-188)||(5871692-5871757)
chr7 (118-201)||(1596718-1596801)
chr7 (128-174)||(2404294-2404340)
chr7 (118-202)||(3519836-3519920)
[»] chr5 (10 HSPs)
chr5 (118-188)||(15590076-15590146)
chr5 (118-188)||(8081225-8081295)
chr5 (118-175)||(24269981-24270038)
chr5 (118-175)||(24346612-24346669)
chr5 (124-202)||(9368719-9368797)
chr5 (118-188)||(18885365-18885435)
chr5 (118-175)||(95377-95434)
chr5 (118-175)||(41666868-41666925)
chr5 (153-205)||(11896302-11896354)
chr5 (118-170)||(24531755-24531807)
[»] chr3 (5 HSPs)
chr3 (118-175)||(31317382-31317439)
chr3 (118-202)||(4155448-4155532)
chr3 (118-202)||(20303175-20303259)
chr3 (118-175)||(16239743-16239800)
chr3 (118-175)||(34992757-34992814)
[»] chr1 (4 HSPs)
chr1 (118-202)||(4112882-4112966)
chr1 (123-202)||(39348233-39348312)
chr1 (118-175)||(8870800-8870857)
chr1 (118-187)||(25145596-25145665)
[»] scaffold0692 (1 HSPs)
scaffold0692 (123-202)||(5635-5714)
[»] chr2 (7 HSPs)
chr2 (118-188)||(2029907-2029977)
chr2 (118-175)||(16419418-16419475)
chr2 (118-202)||(16533436-16533520)
chr2 (118-201)||(14466286-14466369)
chr2 (123-189)||(19981907-19981973)
chr2 (118-175)||(5711550-5711607)
chr2 (153-205)||(34893546-34893598)
[»] chr8 (7 HSPs)
chr8 (118-202)||(7669543-7669626)
chr8 (140-202)||(31197738-31197800)
chr8 (118-175)||(3157120-3157177)
chr8 (118-175)||(3157435-3157492)
chr8 (118-175)||(8084278-8084335)
chr8 (118-175)||(11232305-11232362)
chr8 (131-188)||(35682905-35682962)
[»] chr6 (5 HSPs)
chr6 (118-202)||(33494663-33494747)
chr6 (118-201)||(13353326-13353409)
chr6 (118-201)||(33796451-33796534)
chr6 (118-188)||(6400731-6400801)
chr6 (118-175)||(4868688-4868745)
[»] scaffold0047 (1 HSPs)
scaffold0047 (118-205)||(12768-12854)
[»] scaffold0519 (1 HSPs)
scaffold0519 (118-175)||(2067-2124)


Alignment Details
Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 205
Target Start/End: Complemental strand, 22445687 - 22445573
Alignment:
Q  91 ttaatacaccctatttgatgtgaagtccttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtg 190  Q
    |||| |||| |||||||||||||  | ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  22445687 ttaacacactctatttgatgtgagattcttcgcacaccctctcacgacgaggactattgagtttggttcgtggacataaacggtgggtagtccgatagtg 22445588  T
Q  191 taatcctgatagtag 205  Q
    ||||||| |||||||    
T  22445587 taatcctaatagtag 22445573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 22445805 - 22445756
Alignment:
Q  19 aacggtgggcgtccctatagcaaaaatctgatagtaggtggttcaatgga 68  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  22445805 aacggtgggtgttcctatagcaaaaatctgatagcaggtggttcaatgga 22445756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 5398586 - 5398670
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||||| |||||||| |||||| ||  | |||||||||||||||||| |||| || ||||||||| | || ||||||||    
T  5398586 cttaacacaccccctcacgaccagcactatttggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatag 5398670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 27634192 - 27634262
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||| ||| ||| |||||||| |||||| ||| | ||||||||||||||||||| ||| || |||||||||    
T  27634192 cttaacaccccccctcacgaccagcactattgggcttggttcgtggacataaacagtgggtggtccgatag 27634262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 28245637 - 28245721
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| |||||||  ||||||| |||||| ||| | |||||||||||||||||| |||| || | ||||||| | || ||||||||    
T  28245637 cttaacacaccccatcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatag 28245721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 35796853 - 35796937
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||| ||||| |||| || | ||||||| | || ||||||||    
T  35796853 cttaacacaccccctcacgaccagcactattgggcttggttcgtggagataaatggtgggtggcccgatagcggaaacctgatag 35796937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 118 - 205
Target Start/End: Original strand, 36277102 - 36277189
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatagtag 205  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || ||||||||| | || |||||||||||    
T  36277102 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagtag 36277189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 5871692 - 5871757
Alignment:
Q  123 cacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    ||||||| |||||||| |||||| ||||||||||||||| |||||||| |||  || |||||||||    
T  5871692 cacaccccctcacgaccagcactattgagtttggttcgttgacataaatggtaggtcgtccgatag 5871757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 1596801 - 1596718
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgata 201  Q
    |||| ||||| |||||||||| |||||| ||| | |||||||||||||||||| |||| || | ||||||| | || |||||||    
T  1596801 cttaacacacactctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 1596718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 2404294 - 2404340
Alignment:
Q  128 cctctcacgacgagcactgttgagtttggttcgtggacataaacggt 174  Q
    ||||||||||| |||||| ||| | ||||||||||||||||||||||    
T  2404294 cctctcacgaccagcactattgcgcttggttcgtggacataaacggt 2404340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 3519836 - 3519920
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||||| |||||||| |||| | ||| | |||||||||||||||||| |||| || | ||||||| | || ||||||||    
T  3519836 cttaacacaccccctcacgaccagcattattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgatag 3519920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 15590146 - 15590076
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||| ||||||| |||||||| |||||| ||| |||||||||||||||||||| |||| |||| |||||||    
T  15590146 cttaacacaccccctcacgaccagcactattgggtttggttcgtggacataaatggtgagtagcccgatag 15590076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 8081225 - 8081295
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || |||||||||    
T  8081225 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatag 8081295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 24269981 - 24270038
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||||| |||||||||||||||||| ||||    
T  24269981 cttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtg 24270038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 24346612 - 24346669
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||||| |||||||||||||||||| ||||    
T  24346612 cttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtg 24346669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 9368797 - 9368719
Alignment:
Q  124 acaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||||| |||||||| |||||| ||| |||||||||||||||||| | |||| || |||| |||| | || ||||||||    
T  9368797 acaccccctcacgaccagcactattgggtttggttcgtggacatacatggtgggtggtccaatagcggaaacctgatag 9368719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 18885435 - 18885365
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||| |||||||||||||||| |||||| ||| | ||||||| | |||||||| |||| || |||||||||    
T  18885435 cttaacacaccctctcacgaccagcactattgggcttggttcatagacataaatggtgggtggtccgatag 18885365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 95377 - 95434
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  95377 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 95434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 41666868 - 41666925
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  41666868 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 41666925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Original strand, 11896302 - 11896354
Alignment:
Q  153 ttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatagtag 205  Q
    |||||||||||||||||| |||| || ||||||||| | || |||||||||||    
T  11896302 ttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatagtag 11896354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 170
Target Start/End: Complemental strand, 24531807 - 24531755
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaa 170  Q
    |||| ||||||| |||||||| |||||| ||| | ||||||||||||||||||    
T  24531807 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaa 24531755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 31317439 - 31317382
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| |||||||||||||||||||||||| ||||    
T  31317439 cttaacacaccccctcacgaccagcactattgagtttggttcgtggacataaatggtg 31317382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 4155532 - 4155448
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| |||||||||||||||| |||||| ||| | ||||||||| ||||||||||||| || | ||||||| | || ||||||||    
T  4155532 cttaacacaccctctcacgaccagcactattgggcttggttcgtcgacataaacggtgggtggcccgatagcggaaacctgatag 4155448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 20303175 - 20303259
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||||| |||||||| ||||||||||   |||||||||||||||||| |||| || | ||||||| | || ||||||||    
T  20303175 cttaacacacccgctcacgaccagcactgttggacttggttcgtggacataaatggtgggtggaccgatagcggaaacctgatag 20303259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 16239800 - 16239743
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| | |||| ||||| |||||||||||||||||| ||||    
T  16239800 cttaacacaccccctcacgaccatcactattgagcttggttcgtggacataaatggtg 16239743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 34992814 - 34992757
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  34992814 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 34992757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 118 - 202
Target Start/End: Original strand, 4112882 - 4112966
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||||| |||||||| |||||| ||||| |||||||||||||||||| |||| || |||| |||| | || ||||||||    
T  4112882 cttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtgggtggtccaatagcggaaacctgatag 4112966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 39348233 - 39348312
Alignment:
Q  123 cacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||||||  ||||||| |||||| ||| | |||||||||||||||||| |||| || ||||||||||| || ||||||||    
T  39348233 cacaccccgtcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagtggaaacctgatag 39348312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 8870800 - 8870857
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||  ||| |||||||||||||||||||| ||||    
T  8870800 cttaacacaccccctcacgaccagcacaattgggtttggttcgtggacataaatggtg 8870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 187
Target Start/End: Original strand, 25145596 - 25145665
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgata 187  Q
    |||| ||||||| |||||||| |||||| ||||| ||| ||||||||||| || |||| || ||||||||    
T  25145596 cttaacacaccccctcacgaccagcactattgagcttgattcgtggacattaatggtgggtggtccgata 25145665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 5635 - 5714
Alignment:
Q  123 cacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || ||||||||| | || ||||||||    
T  5635 cacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatag 5714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 2029977 - 2029907
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || |||||||||    
T  2029977 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatag 2029907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 16419475 - 16419418
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||||| |||||||||||||||||| ||||    
T  16419475 cttaacacaccccctcacgaccagcactattgagcttggttcgtggacataaatggtg 16419418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 16533520 - 16533436
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| |||||||||||||||| |||||| |||   |||||||||||||||||| |||| || | ||||||| | || ||||||||    
T  16533520 cttaacacaccctctcacgaccagcactattggccttggttcgtggacataaatggtgggtggcccgatagcgaaaacctgatag 16533436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 14466286 - 14466369
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgata 201  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || | ||||||| | || |||||||    
T  14466286 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 14466369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 189
Target Start/End: Complemental strand, 19981973 - 19981907
Alignment:
Q  123 cacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagt 189  Q
    ||||||||||||| |  |||||| ||||||||||||||| |||| ||| |||| || ||||||||||    
T  19981973 cacaccctctcacaattagcactattgagtttggttcgtagacacaaatggtgggtggtccgatagt 19981907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 5711550 - 5711607
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  5711550 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 5711607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 205
Target Start/End: Complemental strand, 34893598 - 34893546
Alignment:
Q  153 ttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatagtag 205  Q
    |||||||||||||||||| |||| || ||||||||| | || |||||||||||    
T  34893598 ttggttcgtggacataaatggtgggtggtccgatagcgaaaacctgatagtag 34893546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 7669626 - 7669543
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||| | |||||||| |||||| | ||| |||||||||||||||||| |||| || ||||||||||| || ||||||||    
T  7669626 cttaacacacaccctcacgaccagcactat-gagcttggttcgtggacataaatggtgggtggtccgatagtggaaacctgatag 7669543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 202
Target Start/End: Complemental strand, 31197800 - 31197738
Alignment:
Q  140 agcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||||| ||||| |||||||||||||||||| |||| || ||||||||| | || ||||||||    
T  31197800 agcactattgagcttggttcgtggacataaatggtgggtggtccgatagcggaaacctgatag 31197738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 3157120 - 3157177
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  3157120 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 3157177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 3157435 - 3157492
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  3157435 cttaacacacccactcacgaccagcactattgggcttggttcgtggacataaatggtg 3157492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 8084335 - 8084278
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  8084335 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 8084278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 11232305 - 11232362
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  11232305 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 11232362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 35682905 - 35682962
Alignment:
Q  131 ctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||||||| |||||| ||||| |||||||||||||||||| |||| || | |||||||    
T  35682905 ctcacgaccagcactattgagcttggttcgtggacataaatggtgggtggcccgatag 35682962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 33494747 - 33494663
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatag 202  Q
    |||| ||||||  |||||||| |||||| ||| | |||||||||| |||||||||||| || | ||||||||| || ||||||||    
T  33494747 cttaacacaccaactcacgaccagcactattgggcttggttcgtgaacataaacggtgggtggcccgatagtggaaacctgatag 33494663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 13353409 - 13353326
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgata 201  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || | ||||||| | || |||||||    
T  13353409 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 13353326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 201
Target Start/End: Complemental strand, 33796534 - 33796451
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgata 201  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| |||| || | ||||||| | || |||||||    
T  33796534 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggcccgatagcggaaacctgata 33796451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 6400731 - 6400801
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatag 188  Q
    |||| ||| ||| |||||||| |||||| ||| | |||||||||||||||||| |||| || |||||||||    
T  6400731 cttaacaccccccctcacgaccagcactattgggcttggttcgtggacataaatggtgggtggtccgatag 6400801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 4868688 - 4868745
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  4868688 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 4868745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 118 - 205
Target Start/End: Complemental strand, 12854 - 12768
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtgtgtagtccgatagtgtaatcctgatagtag 205  Q
    |||| ||||||| |||||| | |||||| ||||| |||||||||| ||||||| |||| ||  |||||||| | ||||||||||||||    
T  12854 cttaacacaccccctcacgcc-agcactattgagcttggttcgtgaacataaatggtgggtgttccgatagcgaaatcctgatagtag 12768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 175
Target Start/End: Complemental strand, 2124 - 2067
Alignment:
Q  118 cttagcacaccctctcacgacgagcactgttgagtttggttcgtggacataaacggtg 175  Q
    |||| ||||||| |||||||| |||||| ||| | |||||||||||||||||| ||||    
T  2124 cttaacacaccccctcacgaccagcactattgggcttggttcgtggacataaatggtg 2067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University