View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_high_5 (Length: 491)
Name: NF3013_high_5
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 233 - 372
Target Start/End: Complemental strand, 36246178 - 36246041
Alignment:
| Q |
233 |
ttctacaaacttttgtattttaatttgttgtatatatatctctagcttctaataagatttaatagctttaaaaatctcagtctcacagtgatgtgatgtt |
332 |
Q |
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| T |
36246178 |
ttctacaaacttta-tattttaatttgttgtatatatatgtctagcttctaatagggtttaatagctttaaagatct--gtctcatagtgatgtgatgtt |
36246082 |
T |
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| Q |
333 |
ggtgattcatgtattcctc-ggtatgtgaattgtatatcat |
372 |
Q |
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| T |
36246081 |
ggtgattcatgtattcctctggtatgtgaattgtttatcat |
36246041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 110 - 189
Target Start/End: Complemental strand, 36253061 - 36252981
Alignment:
| Q |
110 |
ttgtggaagtgcttgtttgcactcaagattgtctgaaagga-tctcctttctaaaacttatttgatgaggaccttgaagaa |
189 |
Q |
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| T |
36253061 |
ttgtggaagtgcttgtttgcactcaagattgcctaaaaagaatctcctttctcaaacttatttgatggggaccttgaagaa |
36252981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 425 - 482
Target Start/End: Complemental strand, 11155754 - 11155696
Alignment:
| Q |
425 |
tagcatctaatagcttt-aaaaatcttttttcagagataatttcttcatcgtcctatgc |
482 |
Q |
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| T |
11155754 |
tagcatctaatagcttttaaaaatcttttttcagagataatttcttcatcgtcctatgc |
11155696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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