View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_high_6 (Length: 478)

Name: NF3013_high_6
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_high_6
NF3013_high_6
[»] chr5 (41 HSPs)
chr5 (1-427)||(27450800-27451231)
chr5 (111-427)||(26299455-26299768)
chr5 (102-427)||(26297905-26298234)
chr5 (102-425)||(34719878-34720203)
chr5 (120-427)||(39408737-39409047)
chr5 (135-427)||(19715806-19716098)
chr5 (102-427)||(34723864-34724179)
chr5 (110-318)||(34856954-34857158)
chr5 (217-427)||(34724961-34725173)
chr5 (120-296)||(39406999-39407175)
chr5 (334-427)||(34857183-34857276)
chr5 (334-427)||(39407226-39407319)
chr5 (104-245)||(1840974-1841115)
chr5 (100-202)||(26217421-26217523)
chr5 (102-202)||(11136703-11136803)
chr5 (102-259)||(5385072-5385229)
chr5 (102-242)||(10493379-10493514)
chr5 (102-242)||(41782699-41782834)
chr5 (111-262)||(18879629-18879780)
chr5 (120-246)||(27195441-27195567)
chr5 (101-262)||(27905479-27905640)
chr5 (102-193)||(3805422-3805513)
chr5 (102-262)||(32157365-32157525)
chr5 (110-190)||(14501398-14501478)
chr5 (214-262)||(38523237-38523285)
chr5 (214-262)||(22921543-22921591)
chr5 (102-193)||(19283633-19283724)
chr5 (135-242)||(4983965-4984072)
chr5 (99-175)||(29322060-29322136)
chr5 (214-262)||(29322163-29322211)
chr5 (213-260)||(15932048-15932095)
chr5 (212-259)||(20188460-20188507)
chr5 (102-193)||(43385798-43385889)
chr5 (214-252)||(2675413-2675451)
chr5 (426-472)||(20371705-20371751)
chr5 (426-472)||(20397429-20397475)
chr5 (218-259)||(20191217-20191258)
chr5 (214-262)||(1224676-1224724)
chr5 (102-175)||(22921438-22921511)
chr5 (156-193)||(28430603-28430640)
chr5 (214-242)||(14501354-14501382)
[»] chr1 (48 HSPs)
chr1 (214-424)||(38061406-38061618)
chr1 (102-202)||(38061659-38061759)
chr1 (110-262)||(24575308-24575460)
chr1 (102-192)||(5205160-5205250)
chr1 (110-244)||(7955657-7955791)
chr1 (337-421)||(7995006-7995090)
chr1 (105-262)||(36418523-36418680)
chr1 (102-193)||(28005735-28005826)
chr1 (102-242)||(29678104-29678244)
chr1 (120-244)||(15257844-15257968)
chr1 (102-242)||(43090032-43090167)
chr1 (100-262)||(32179331-32179493)
chr1 (156-262)||(37441793-37441899)
chr1 (215-256)||(42936610-42936651)
chr1 (102-183)||(45582158-45582239)
chr1 (214-262)||(24470506-24470554)
chr1 (426-477)||(2334936-2334987)
chr1 (212-259)||(15014114-15014161)
chr1 (110-193)||(21681671-21681754)
chr1 (110-193)||(45654416-45654499)
chr1 (97-188)||(47603463-47603554)
chr1 (120-262)||(31868907-31869049)
chr1 (218-259)||(46265591-46265632)
chr1 (149-245)||(3576985-3577081)
chr1 (219-254)||(15662407-15662442)
chr1 (216-259)||(25125396-25125439)
chr1 (216-262)||(14770843-14770889)
chr1 (103-193)||(35309009-35309099)
chr1 (123-192)||(15305903-15305972)
chr1 (112-193)||(30211772-30211853)
chr1 (218-259)||(42916749-42916790)
chr1 (110-203)||(47982674-47982762)
chr1 (218-254)||(14579019-14579055)
chr1 (218-254)||(23916246-23916282)
chr1 (105-193)||(44595832-44595915)
chr1 (100-167)||(14579106-14579173)
chr1 (120-202)||(7994764-7994846)
chr1 (250-307)||(7994907-7994962)
chr1 (110-172)||(15014023-15014085)
chr1 (101-147)||(39577640-39577686)
chr1 (218-259)||(7595836-7595877)
chr1 (102-175)||(24470581-24470654)
chr1 (218-259)||(35810226-35810266)
chr1 (136-193)||(50445516-50445573)
chr1 (110-202)||(7840748-7840839)
chr1 (160-192)||(13645766-13645798)
chr1 (214-262)||(35309116-35309164)
chr1 (111-195)||(48575783-48575867)
[»] chr4 (47 HSPs)
chr4 (102-308)||(1803172-1803375)
chr4 (110-244)||(40797162-40797296)
chr4 (102-262)||(48977004-48977164)
chr4 (102-203)||(25133933-25134034)
chr4 (102-262)||(9469428-9469587)
chr4 (102-262)||(19850132-19850292)
chr4 (102-262)||(22183763-22183923)
chr4 (110-262)||(49820386-49820538)
chr4 (110-262)||(50605463-50605615)
chr4 (121-255)||(24009417-24009551)
chr4 (102-202)||(51994083-51994183)
chr4 (101-192)||(52705592-52705683)
chr4 (120-262)||(44377628-44377765)
chr4 (101-193)||(4275591-4275683)
chr4 (104-191)||(7505426-7505513)
chr4 (110-262)||(53369070-53369222)
chr4 (120-192)||(46945225-46945297)
chr4 (102-254)||(43386534-43386686)
chr4 (121-240)||(50711443-50711557)
chr4 (214-262)||(36543406-36543454)
chr4 (214-262)||(44792773-44792821)
chr4 (121-262)||(51409094-51409235)
chr4 (110-262)||(21436315-21436467)
chr4 (102-184)||(11055891-11055973)
chr4 (111-192)||(12673718-12673799)
chr4 (218-259)||(43812659-43812700)
chr4 (102-175)||(55892738-55892811)
chr4 (212-248)||(12790152-12790188)
chr4 (214-262)||(45674404-45674452)
chr4 (214-254)||(54742197-54742237)
chr4 (102-175)||(12790213-12790286)
chr4 (156-254)||(28266732-28266830)
chr4 (218-259)||(36156893-36156934)
chr4 (102-175)||(44792848-44792921)
chr4 (131-198)||(25103182-25103252)
chr4 (218-254)||(32398365-32398401)
chr4 (156-244)||(48151735-48151823)
chr4 (102-189)||(52812967-52813054)
chr4 (217-259)||(50147330-50147372)
chr4 (214-259)||(6874934-6874979)
chr4 (212-253)||(18990302-18990343)
chr4 (111-175)||(9222842-9222906)
chr4 (156-192)||(16743169-16743205)
chr4 (105-193)||(22720747-22720835)
chr4 (110-174)||(45674312-45674376)
chr4 (218-254)||(48340234-48340270)
chr4 (214-254)||(52813111-52813151)
[»] chr3 (31 HSPs)
chr3 (102-246)||(25252874-25253018)
chr3 (334-421)||(49026113-49026200)
chr3 (102-202)||(5418043-5418143)
chr3 (102-262)||(39471059-39471219)
chr3 (120-244)||(40942913-40943036)
chr3 (102-175)||(54432946-54433019)
chr3 (102-194)||(27040592-27040684)
chr3 (105-193)||(38644273-38644361)
chr3 (110-262)||(32688567-32688719)
chr3 (111-193)||(20407799-20407881)
chr3 (218-259)||(53530140-53530181)
chr3 (218-262)||(45714219-45714263)
chr3 (102-262)||(52198776-52198936)
chr3 (214-254)||(23206925-23206965)
chr3 (120-192)||(30662813-30662885)
chr3 (105-192)||(7834065-7834147)
chr3 (102-242)||(30740732-30740872)
chr3 (135-246)||(33895949-33896060)
chr3 (218-259)||(33439226-33439267)
chr3 (100-193)||(39133776-39133869)
chr3 (218-259)||(45994906-45994947)
chr3 (101-190)||(46294289-46294378)
chr3 (120-193)||(52934244-52934317)
chr3 (218-259)||(54394036-54394077)
chr3 (138-262)||(12710096-12710220)
chr3 (102-193)||(7029135-7029226)
chr3 (212-262)||(26050112-26050162)
chr3 (214-255)||(7834171-7834212)
chr3 (100-153)||(19561491-19561544)
chr3 (102-171)||(41609314-41609383)
chr3 (136-192)||(39943782-39943838)
[»] chr6 (22 HSPs)
chr6 (100-262)||(7957052-7957214)
chr6 (102-262)||(10346212-10346372)
chr6 (102-262)||(7436700-7436859)
chr6 (120-244)||(13311366-13311490)
chr6 (115-202)||(33109845-33109932)
chr6 (111-262)||(472835-472986)
chr6 (100-193)||(6998574-6998667)
chr6 (110-260)||(18961853-18962003)
chr6 (213-262)||(6998658-6998707)
chr6 (218-259)||(10962405-10962446)
chr6 (156-248)||(12428097-12428189)
chr6 (426-468)||(15390412-15390454)
chr6 (218-259)||(27925506-27925547)
chr6 (110-193)||(4442044-4442127)
chr6 (105-172)||(10962492-10962559)
chr6 (212-253)||(5641201-5641242)
chr6 (156-193)||(8597452-8597489)
chr6 (218-255)||(9951377-9951414)
chr6 (218-259)||(17493316-17493357)
chr6 (160-193)||(22295414-22295447)
chr6 (218-259)||(26644005-26644046)
chr6 (218-259)||(26749971-26750012)
[»] chr2 (27 HSPs)
chr2 (100-242)||(2647600-2647742)
chr2 (102-262)||(27633142-27633302)
chr2 (134-262)||(12139398-12139526)
chr2 (102-262)||(36538077-36538237)
chr2 (110-262)||(20986072-20986224)
chr2 (102-262)||(41958542-41958707)
chr2 (111-262)||(26435776-26435927)
chr2 (157-242)||(40458387-40458472)
chr2 (215-254)||(20204376-20204415)
chr2 (212-254)||(11027397-11027439)
chr2 (218-259)||(30711567-30711608)
chr2 (214-259)||(38410221-38410266)
chr2 (120-193)||(40675188-40675256)
chr2 (99-192)||(41648740-41648833)
chr2 (218-262)||(33164544-33164588)
chr2 (214-262)||(33830990-33831038)
chr2 (215-254)||(34064242-34064281)
chr2 (134-193)||(44741345-44741404)
chr2 (426-472)||(35039071-35039117)
chr2 (110-175)||(33830898-33830963)
chr2 (218-259)||(34116736-34116777)
chr2 (212-244)||(3409847-3409879)
chr2 (214-250)||(33475734-33475770)
chr2 (102-152)||(1093914-1093964)
chr2 (100-186)||(29478041-29478127)
chr2 (218-259)||(39689671-39689712)
chr2 (218-262)||(18053512-18053556)
[»] scaffold0316 (1 HSPs)
scaffold0316 (102-259)||(18710-18867)
[»] chr7 (43 HSPs)
chr7 (119-254)||(18250634-18250769)
chr7 (110-245)||(17025994-17026130)
chr7 (102-262)||(36926409-36926569)
chr7 (110-253)||(26215725-26215868)
chr7 (102-254)||(42071520-42071672)
chr7 (120-246)||(35544165-35544290)
chr7 (120-244)||(33899603-33899727)
chr7 (102-260)||(7539633-7539791)
chr7 (134-262)||(3931328-3931457)
chr7 (97-262)||(5776545-5776710)
chr7 (214-262)||(28950285-28950333)
chr7 (110-262)||(37333705-37333858)
chr7 (110-262)||(666196-666348)
chr7 (110-193)||(7443837-7443920)
chr7 (102-262)||(43052282-43052442)
chr7 (102-192)||(31490697-31490787)
chr7 (102-192)||(49035115-49035205)
chr7 (120-242)||(45054811-45054933)
chr7 (214-262)||(388527-388575)
chr7 (216-259)||(3941791-3941834)
chr7 (102-193)||(20259979-20260070)
chr7 (102-152)||(27232473-27232523)
chr7 (102-175)||(26719159-26719227)
chr7 (214-254)||(5795494-5795534)
chr7 (214-262)||(15433729-15433777)
chr7 (105-262)||(18740839-18740991)
chr7 (102-193)||(22074566-22074652)
chr7 (212-262)||(33124198-33124248)
chr7 (102-175)||(388427-388500)
chr7 (110-175)||(5795561-5795626)
chr7 (102-175)||(15433629-15433702)
chr7 (218-259)||(27232391-27232432)
chr7 (120-193)||(36471827-36471895)
chr7 (218-259)||(37106263-37106304)
chr7 (99-175)||(28950361-28950436)
chr7 (214-244)||(26719254-26719284)
chr7 (212-262)||(46574236-46574286)
chr7 (212-245)||(10618131-10618164)
chr7 (214-255)||(17608140-17608181)
chr7 (102-175)||(45174637-45174710)
chr7 (100-141)||(46574319-46574360)
chr7 (102-182)||(30918930-30919010)
chr7 (218-254)||(37402024-37402060)
[»] scaffold0444 (1 HSPs)
scaffold0444 (120-262)||(1393-1530)
[»] scaffold0746 (1 HSPs)
scaffold0746 (110-195)||(5333-5413)
[»] chr8 (17 HSPs)
chr8 (102-192)||(13784210-13784295)
chr8 (1-102)||(6025782-6025883)
chr8 (120-242)||(43966900-43967022)
chr8 (102-193)||(9413313-9413404)
chr8 (120-244)||(39477436-39477559)
chr8 (120-254)||(22563276-22563410)
chr8 (214-261)||(11161190-11161237)
chr8 (125-245)||(12377744-12377864)
chr8 (102-172)||(34515555-34515625)
chr8 (222-254)||(453058-453090)
chr8 (110-243)||(25731853-25731981)
chr8 (110-193)||(22930898-22930976)
chr8 (156-193)||(17865723-17865760)
chr8 (218-259)||(23180865-23180906)
chr8 (102-195)||(32740279-32740372)
chr8 (214-254)||(10750260-10750300)
chr8 (102-166)||(27189629-27189693)
[»] scaffold0106 (1 HSPs)
scaffold0106 (104-202)||(26495-26593)
[»] scaffold0043 (1 HSPs)
scaffold0043 (100-192)||(16490-16582)
[»] scaffold0658 (1 HSPs)
scaffold0658 (102-193)||(6442-6533)
[»] scaffold0224 (1 HSPs)
scaffold0224 (218-259)||(7943-7984)
[»] scaffold0484 (1 HSPs)
scaffold0484 (426-472)||(10495-10541)
[»] scaffold0135 (1 HSPs)
scaffold0135 (111-175)||(33495-33559)


Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 27451231 - 27450800
Alignment:
Q  1 aaatgaaggagaggttattctgttttctgctaactcttcaaatagctagtttgctttgtggagcaaaagggttttttctttcaactcaagacatttcaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27451231 aaatgaaggagaggttattctgttttctgctaactcttcaaatagctagtttgctttgtggagcaaaagggttttttctttcaactcaagacattttaca 27451132  T
Q  101 ttagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcga 200  Q
    |||||| | ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||| |||||||||| ||||||    
T  27451131 ttagggttggaaatgagtcgagtcgagtcaaacctgtctgagctcgattcgactcgataagaattggttcggctcgaaactcaactcgagttcgaagcga 27451032  T
Q  201 acannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacc--ttttttttgt 298  Q
    |||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  27451031 acatttttttaaactcgagttcggctcgtttaaagttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaaccttttttttttgt 27450932  T
Q  299 caaaaatattcgacttattt---nnnnnnnnnnnnnnngtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagctttt 395  Q
    ||||||||||  ||||||||                  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27450931 caaaaatatttaacttatttaaaataaaaaaaaaagaagtaaaactatgaagcgtacattactactgcaggacaatccatatactacatgtatagctttt 27450832  T
Q  396 acattataattgagatgcacttctctcacaca 427  Q
    ||||||||||||||||||||||||||||||||    
T  27450831 acattataattgagatgcacttctctcacaca 27450800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 111 - 427
Target Start/End: Original strand, 26299455 - 26299768
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnn 210  Q
    ||||||||||||||||||||||  |||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||| ||||            
T  26299455 aaatgagtcgagtcgagtcaaacttgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagtgaaccttttttt 26299554  T
Q  211 aaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt-gtcaaaaatattc 309  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||     
T  26299555 aaactcgagttcggctcgtttaaagttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaacttttttttttgtcaaaaatattt 26299654  T
Q  310 gacttatttnnnnnnnnnnnnnnngtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgag 409  Q
    || ||||||                 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26299655 gatttatttaaaaataaaaaaa----aaaactatgaagcatacattactactgcagcacaatccatatactacatgtatagcttttacattataattgag 26299750  T
Q  410 atgcacttctctcacaca 427  Q
    ||||||||||||||||||    
T  26299751 atgcacttctctcacaca 26299768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 102 - 427
Target Start/End: Original strand, 26297905 - 26298234
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    |||||||  ||||||||||| || ||||||| |||| |||||||||||||| | |||||||||||||||||||| |||||||| |||||||| |||||||    
T  26297905 tagggctgaaaatgagtcgaatcaagtcaaacctgtgtgagctcgattcgactcgataagaattggttcggctcgaaactcgattcgagttcgaagcgaa 26298004  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt-gtca 300  Q
    |        ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  26298005 cctttttttaaactcgagttcggctcgtttaaagttcacgaatagttcggttcagctcgtttactcgaattgtatatttcacaaacttttttttttgtca 26298104  T
Q  301 aaaatattcgacttatttnnnnnnnnnnnnnnn---gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttac 397  Q
    |||||||| |||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  26298105 aaaatatttgacttatttaaaaaaaaaaaaaaaaaagtaaaactatgaagcgtacattactactgcagcacaatccatatactacttgtatagcttttac 26298204  T
Q  398 attataattgagatgcacttctctcacaca 427  Q
    ||||||||||||||||||||||||||||||    
T  26298205 attataattgagatgcacttctctcacaca 26298234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 102 - 425
Target Start/End: Complemental strand, 34720203 - 34719878
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||| | ||||||||||||||||| || ||||||||||||||||| |||||||    
T  34720203 tagggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagcgaa 34720104  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt---gt 298  Q
    |        || ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  34720103 cttttttttaagctcgagttcagctcgtttaaagttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaacctttttttttttgt 34720004  T
Q  299 caaaaatattcgacttatttnnnnnnnnnnnnnnngtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttaca 398  Q
    |||||||||| ||| |||||               |||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  34720003 caaaaatatttgacatatttaaaaaaaaaaaaaa-gtaaaattatgaagcgtaaatcactactgcagcacaatccatatactacatgtatagcttttaca 34719905  T
Q  399 ttataattgagatgcacttctctcaca 425  Q
    |||||||||||||||||||||||||||    
T  34719904 ttataattgagatgcacttctctcaca 34719878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 120 - 427
Target Start/End: Original strand, 39408737 - 39409047
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    ||||||||||  | ||||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||        || ||||||    
T  39408737 gagtcgagtcgtacctgtccgagctcgattcgactcgataagaattggttcggctcgaaactcgactcgagttcgaagcgaacttttttttaagctcgag 39408836  T
Q  220 ttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt-gtcaaaaatattcgacttattt 318  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||| |||||    
T  39408837 ttcggctcgtttaaagttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaacttttttttttgtcaaaaatatttgacatattt 39408936  T
Q  319 nnnnnnnnnnnnnnn--gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcact 416  Q
                     |||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39408937 taaaatataaaaaaaaagtaaaactatgaagcgtaaatcactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcact 39409036  T
Q  417 tctctcacaca 427  Q
    |||||||||||    
T  39409037 tctctcacaca 39409047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 135 - 427
Target Start/End: Original strand, 19715806 - 19716098
Alignment:
Q  135 tgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaa 234  Q
    |||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||| ||||||||        ||||||||||||||||||||||||    
T  19715806 tgtctgagctcgattcgactcgataataattggttcggctcgaaactcgactcgagttcgaagcgaac-cttttttaaactcgagttcggctcgtttaaa 19715904  T
Q  235 gttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaaccttttttttgt--caaaaatattcgacttatttnnnnnnnnnnnnnn 332  Q
    ||||||||| |||| || | |||||||||||||||||||||||||||||||||||||||||| |  |||||||||| ||| |||||                  
T  19715905 gttcacgaatagttcggcttagctcgtttactcgaattgtatatttcacaaaccttttttttttttcaaaaatatttgacatattttaaaaaaaataaaa 19716004  T
Q  333 ngtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctctcacaca 427  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19716005 -gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctctcacaca 19716098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 102 - 427
Target Start/End: Complemental strand, 34724179 - 34723864
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| || ||||| ||||||||||||| | ||||||||||||||| | || ||||||||||||||||| |||||||    
T  34724179 tagggctggaaatgagtcgagtcgagtcgaacctgtccgagctcgattcgactcgataagaattggttcagttcgaaactcgactcgagttcgaagcgaa 34724080  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt--gtc 299  Q
    |        || ||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||  |||    
T  34724079 cctttttttaagctcgagttcagctcgtttagagttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaactttttttttttgtc 34723980  T
Q  300 aaaaatattcgacttatttnnnnnnnnnnnnnnngtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacat 399  Q
    ||||||||| ||| |||||                 |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  34723979 aaaaatatttgacatatttaaaaa------------aaaactatgaagcgtaaatcactactgcagcacaatccgtatactacatgtatagcttttacat 34723892  T
Q  400 tataattgagatgcacttctctcacaca 427  Q
    ||||||||||||||||||||||||||||    
T  34723891 tataattgagatgcacttctctcacaca 34723864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 110 - 318
Target Start/End: Original strand, 34856954 - 34857158
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||||| |||||||||||| ||||||||| | |||||||||||||||||||| ||||| ||||||||||| |||||||||          
T  34856954 gaaatgagtcgagtcgagtcgaatctgtctgagttcgattcgactcgataagaattggttcggctcgaaacttgactcgagttcgaagcgaacatttttt 34857053  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaaccttttttttgtcaaaaatattc 309  Q
     ||  ||||||||||||||||    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  34857054 taagttcgagttcggctcgtt----gttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaaccttttttttgtcaaaaatattt 34857149  T
Q  310 gacttattt 318  Q
    ||| |||||    
T  34857150 gacatattt 34857158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 217 - 427
Target Start/End: Complemental strand, 34725173 - 34724961
Alignment:
Q  217 gagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaaccttttttttg-tcaaaaatattcgactta 315  Q
    |||||| || ||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||  |    
T  34725173 gagttcagcacgtttaaagttcatgaacagttcggttcagctcgtttacttgaattgtatatttcacaaaccttttttttggtcaaaaatatttgacaca 34725074  T
Q  316 tttnnnnnnnnnnnnnnn-gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgca 414  Q
    |||                |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  34725073 ttttaaaaaaaaaaaaaaagtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtataacttttacattataattgagatgca 34724974  T
Q  415 cttctctcacaca 427  Q
    |||| ||||||||    
T  34724973 cttccctcacaca 34724961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 120 - 296
Target Start/End: Original strand, 39406999 - 39407175
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    ||||||||||  | ||||| ||||| ||||||| | ||||||||||||||||| || ||||||||||||||||| ||| ||||        || ||||||    
T  39406999 gagtcgagtcgtacctgtccgagcttgattcgactcgataagaattggttcggttcgaaactcgactcgagttcgaagtgaacttttttttaagctcgag 39407098  T
Q  220 ttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt 296  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  39407099 ttcggctcgtttaaagttcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaacctttttttt 39407175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 334 - 427
Target Start/End: Original strand, 34857183 - 34857276
Alignment:
Q  334 gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctctcacaca 427  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34857183 gtaaaactatgaagtgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctctcacaca 34857276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 334 - 427
Target Start/End: Original strand, 39407226 - 39407319
Alignment:
Q  334 gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctctcacaca 427  Q
    |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39407226 gtaaaactatgaagcgtaaatcactactgcagcacaatccatatactacatgtatagcttttacattataattaagatgcacttctctcacaca 39407319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 104 - 245
Target Start/End: Complemental strand, 1841115 - 1840974
Alignment:
Q  104 gggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaaca 203  Q
    ||||| |||||||||||||||||  |||| |||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||| |  |||||     
T  1841115 gggctggaaatgagtcgagtcgaaccaaacctgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagttcgatacgaacc 1841016  T
Q  204 nnnnnnnaaactcgagttcggctcgtttaaagttcacgaaca 245  Q
            ||||||||||||||||||||||||||||||||||    
T  1841015 ctttttttaactcgagttcggctcgtttaaagttcacgaaca 1840974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 100 - 202
Target Start/End: Original strand, 26217421 - 26217523
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcg 199  Q
    ||||||| | |||||||||||||||||||| ||  |||||||||||| ||||| |  ||||||||||||||||||| |||||||||||||||||||| ||    
T  26217421 attagggttggaaatgagtcgagtcgagtcgaacttgtctgagctcggttcgactcaataagaattggttcggctcgaaactcgactcgagttcaaaacg 26217520  T
Q  200 aac 202  Q
    |||    
T  26217521 aac 26217523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 11136803 - 11136703
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| ||  ||||||| ||||  |||||| ||||||||| |||||||||| |||||||||||||||||||| ||||    
T  11136803 tagggctggaaatgagtcgagtcgagtcgaacttgtctgaactcggctcgattcgataagaataggttcggctcgaaactcgactcgagttcaaaacgaa 11136704  T
Q  202 c 202  Q
    |    
T  11136703 c 11136703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 259
Target Start/End: Complemental strand, 5385229 - 5385072
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||||||||||||||| || ||  | |||||||||||||||||| ||| | |||| ||||||||| ||||| |||||||||||||  ||||    
T  5385229 tagggctggaaatgagtcgagtcgaatcgaacttttctgagctcgattcgattcgattaaaatttgttcggctcgaaacttgactcgagttcaacacgaa 5385130  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |         | |||||||||| ||||||||||||||||||||| || ||||| ||||    
T  5385129 ctctttttttagctcgagttcgactcgtttaaagttcacgaacaattcggttcggctc 5385072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 10493379 - 10493514
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||||||||||||||| || || |||||||||||||| ||     |||||||| ||||||||||| ||||||||||||||||| || ||||    
T  10493379 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcgactc-----gataagaaatggttcggctcgaaactcgactcgagttcgaaacgaa 10493473  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    |         ||||| |||||||||||||||||||||||||    
T  10493474 cctttttttcaactcaagttcggctcgtttaaagttcacga 10493514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 41782699 - 41782834
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||| |||||||||||||| ||| ||| |||||||| ||     ||||||||||||||||||||| |||||||||||||||||||| ||||    
T  41782699 tagggctggaaataagtcgagtcgagtcgaatttgtttgagctcggtt-----tgataagaattggttcggctcgaaactcgactcgagttcaaaacgaa 41782793  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    |           |||||||||||||||||||||||||||||    
T  41782794 cctttttttgggctcgagttcggctcgtttaaagttcacga 41782834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 18879629 - 18879780
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnn 210  Q
    ||||||||||||||||  | |||||||||||| |||  |||| | |||||||||||||||||||| ||||| | ||||||||| |  |||||            
T  18879629 aaatgagtcgagtcgaaccgaatctgtctgagttcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaactatttttt 18879728  T
Q  211 aaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
     | |||||||||||||| |||||||||||||||||||| ||||| |||||||    
T  18879729 cagctcgagttcggctcatttaaagttcacgaacagttcggttcggctcgtt 18879780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 246
Target Start/End: Original strand, 27195441 - 27195567
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||  ||||||||||||| |||| |  ||||||||||||||||||| |||||| |||||||||  || |||||         ||||||||    
T  27195441 gagtcgagtcgaacatgtctgagctcgactcgactcaataagaattggttcggctcgaaactctactcgagtttgaaacgaaccttttctctaactcgag 27195540  T
Q  220 ttcggctcgtttaaagttcacgaacag 246  Q
    |||||||||||||||||||||||||||    
T  27195541 ttcggctcgtttaaagttcacgaacag 27195567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 262
Target Start/End: Original strand, 27905479 - 27905640
Alignment:
Q  101 ttagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcga 200  Q
    |||||||| |||||||||||||||||  | ||  | ||||||||||  |||| |||||||||||||||||||| | ||||||| ||||||||| |  |||    
T  27905479 ttagggctggaaatgagtcgagtcgaaccgaacttatctgagctcggctcgacttgataagaattggttcggcacgaaactcggctcgagttcgacacga 27905578  T
Q  201 acannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||         | | ||| ||||||||||||||||||||||||||||| ||||| |||||||    
T  27905579 actattttttcagcccgaattcggctcgtttaaagttcacgaacagttcggttcggctcgtt 27905640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 3805513 - 3805422
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| |||||||||||||||||  | || |||||||||||||  |||| | |||||||||||||||||||| ||||||| |||||||||    
T  3805513 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttc 3805422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 102 - 262
Target Start/End: Complemental strand, 32157525 - 32157365
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||    || ||||||| |||||  |||| | |||||||||||||||||||| ||||| | ||||||||| |  ||||    
T  32157525 tagggctggaaatgagtcgagtcgaactgaacctgtctgggctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 32157426  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  32157425 ctattttttcagctcgagttcggctcgtttaaagttcacgaccagttcggttcggctcgtt 32157365  T

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Target: chr5; HSP #24
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 14501478 - 14501398
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgag 190  Q
    ||||||||||| |||||||| ||| ||||||||||||  |||| | ||||||||| |||||||||| ||||||||||||||    
T  14501478 gaaatgagtcgcgtcgagtcgaatttgtctgagctcggctcgactcgataagaatcggttcggctcgaaactcgactcgag 14501398  T

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Target: chr5; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 38523285 - 38523237
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38523285 ctcgagttcggctcgtttaaagttcacgaacagtttggttcggctcgtt 38523237  T

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Target: chr5; HSP #26
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 22921543 - 22921591
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  22921543 ctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 22921591  T

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Target: chr5; HSP #27
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 19283724 - 19283633
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| |||||||||||||| || || ||  | ||||||||||| |||| | ||||||||||||||  |||| |||||||||||||||||    
T  19283724 tagggctggaaatgagtcgagtagaatcgaacttatctgagctcgactcgactcgataagaattggtttagctcgaaactcgactcgagttc 19283633  T

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Target: chr5; HSP #28
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 135 - 242
Target Start/End: Complemental strand, 4984072 - 4983965
Alignment:
Q  135 tgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaa 234  Q
    ||||||||||||  |||| | ||||||||||||||| |||  |||||||||||||||||||| |||||           |||||||||||||||||||||    
T  4984072 tgtctgagctcggctcgactcgataagaattggttcagcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgagttcggctcgtttaaa 4983973  T
Q  235 gttcacga 242  Q
    ||||||||    
T  4983972 gttcacga 4983965  T

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Target: chr5; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 99 - 175
Target Start/End: Original strand, 29322060 - 29322136
Alignment:
Q  99 cattagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||||| |||||||||||||||||  | || ||| |||||||||  |||| | ||||||||||||||||||||    
T  29322060 cattagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctc 29322136  T

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Target: chr5; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 29322163 - 29322211
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  29322163 ctcgagttcggctcgtttaaagttcacgaactgttcggttcggctcgtt 29322211  T

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Target: chr5; HSP #31
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 260
Target Start/End: Original strand, 15932048 - 15932095
Alignment:
Q  213 actcgagttcggctcgtttaaagttcacgaacagtttggttcagctcg 260  Q
    |||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  15932048 actcgagttcggttcgtttaaagttcacgaacagttcggttcggctcg 15932095  T

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Target: chr5; HSP #32
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 20188460 - 20188507
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  20188460 aactcaagttccgctcgtttaaagttcacgaacagtttggttcggctc 20188507  T

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Target: chr5; HSP #33
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 43385798 - 43385889
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| |||||| | ||||||||||| ||   |||||||||||  |||| | ||||||||||||||| |||| ||||||| |||||||||    
T  43385798 tagggctggaaatgtgccgagtcgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttc 43385889  T

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Target: chr5; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 252
Target Start/End: Original strand, 2675413 - 2675451
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggt 252  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  2675413 ctcgagttcgactcgtttaaagttcacgaacagtttggt 2675451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 20371751 - 20371705
Alignment:
Q  426 catgcccccacgcacccttgtcctttgtatctttgatcctgtggtct 472  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  20371751 catgcacccacacacccttgtcctttgaatctttgatcctgtggtct 20371705  T

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Target: chr5; HSP #36
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 20397475 - 20397429
Alignment:
Q  426 catgcccccacgcacccttgtcctttgtatctttgatcctgtggtct 472  Q
    ||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  20397475 catgcacccacacacccttgtcctttgaatctttgatcctgtggtct 20397429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 20191258 - 20191217
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  20191258 agttcggctcgtttaaagttcacaaacagtttggttcggctc 20191217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 1224676 - 1224724
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||||||||| ||||||||| |||||||||||||| ||||| |||||||    
T  1224676 ctcgagttcgactcgtttaaggttcacgaacagttcggttcggctcgtt 1224724  T

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Target: chr5; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 22921438 - 22921511
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| ||||||||||||||||| || |  |||||||||||||| || | | ||||| ||||||||| ||||    
T  22921438 tagggctggaaatgagtcgagtcgaatcgagcctgtctgagctcgactccactcgataaaaattggttctgctc 22921511  T

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Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 28430603 - 28430640
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||| |||| ||||||||||||||||||||||    
T  28430603 gataagaattagttcagctcaaaactcgactcgagttc 28430640  T

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Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 242
Target Start/End: Complemental strand, 14501382 - 14501354
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacga 242  Q
    |||||||||||||||||||||||||||||    
T  14501382 ctcgagttcggctcgtttaaagttcacga 14501354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 128; Significance: 6e-66; HSPs: 48)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 214 - 424
Target Start/End: Complemental strand, 38061618 - 38061406
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacctttttttt-gtcaaaaatattcgac 312  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  38061618 ctcgagttcggctcgtttaaaattcacgaacagttcggttcagctcgtttactcgaattgtatatttcacaaacctttttttttgtcaaaaatatttgac 38061519  T
Q  313 ttatttnnnnnnnnnnnnnnn-gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagat 411  Q
     |||||                ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  38061518 atatttaaaacaaaaaaaaaaagtaaaactatgaagcgtacattactactgcagcacaatccatatactatttgtatagcttttacattataattgagat 38061419  T
Q  412 gcacttctctcac 424  Q
    |||||||||||||    
T  38061418 gcacttctctcac 38061406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 102 - 202
Target Start/End: Complemental strand, 38061759 - 38061659
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||||    
T  38061759 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactcgataagaattggttcggctcaaaattcgactcgagttcgaagcgaa 38061660  T
Q  202 c 202  Q
    |    
T  38061659 c 38061659  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 24575308 - 24575460
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||||| || |||||||||||||||| || | |||||||||||||||||||| ||||||||||||||||  || |||||           
T  24575308 gaaatgagtcgagtcgagtcgaacctgtctgagctcgatttgaatcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaacttttttt 24575407  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      ||||||||||||||||||||||||||||||||||  | ||||| |||||||    
T  24575408 ttaactcgagttcggctcgtttaaagttcacgaacaactcggttcggctcgtt 24575460  T

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Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 5205250 - 5205160
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||| |||||||||||||||||||| || ||||||||||||||||||| |  ||||||||||||||||||| ||||||||||||||||    
T  5205250 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagctcgattcgactccataagaattggttcggctcgaaactcgactcgagtt 5205160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 7955657 - 7955791
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||||| ||||||||||||||||| |||| |  ||||||||||||||||||| |||||||  |||||||| || ||||            
T  7955657 gaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcaataagaattggttcggctcgaaactcggttcgagttcgaaacgaatctttttt 7955756  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaac 244  Q
      | |||||||||||||||||||||||||||||||    
T  7955757 ctagctcgagttcggctcgtttaaagttcacgaac 7955791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 337 - 421
Target Start/End: Original strand, 7995006 - 7995090
Alignment:
Q  337 aaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctct 421  Q
    |||||||||| ||||||||||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||  ||||||||    
T  7995006 aaactatgaaacgtacattactaccgtagcacaatccatatactacatatatagctttgacattataattgagatatacttctct 7995090  T

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Target: chr1; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 105 - 262
Target Start/End: Original strand, 36418523 - 36418680
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacan 204  Q
    |||| ||||||||||||||||| || |||||| |||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  ||||       
T  36418523 ggctggaaatgagtcgagtcgaatcgaatctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaatta 36418622  T
Q  205 nnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
           | ||||||||||| ||||||||||||||||||||||| ||||| |||||||    
T  36418623 ttttttcagctcgagttcggttcgtttaaagttcacgaacagttcggttcggctcgtt 36418680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 28005735 - 28005826
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| |||||||||||||||||||| || || ||||||||||| |||| | |||||||||||||||||||| ||||||||||| |||||    
T  28005735 tagggctggaaatgagtcgagtcgagtcgaacctctctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcaagttc 28005826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 29678244 - 29678104
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||||||||||||||| || || ||||||||||| || |||| | |||||||| ||||||||||| ||||||||||| ||||| || ||||    
T  29678244 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagcttgactcgactcgataagaaatggttcggctcgaaactcgactcaagttcgaaacgaa 29678145  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    |         | |||||||||||||||||||||||||||||    
T  29678144 cctttttttcatctcgagttcggctcgtttaaagttcacga 29678104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 15257968 - 15257844
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||||||||||||||| | |||| | |||||||||||||||||||| |||||||  |||||||| || |||||         | ||||||    
T  15257968 gagtcgagtcgaatctgtctgagctcaactcgactcgataagaattggttcggctcgaaactcggttcgagttcgaaacgaaccatttttctagctcgag 15257869  T
Q  220 ttcggctcgtttaaagttcacgaac 244  Q
    |||||||||||||||||||||||||    
T  15257868 ttcggctcgtttaaagttcacgaac 15257844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 242
Target Start/End: Complemental strand, 43090167 - 43090032
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| ||  ||||||||||||  ||||      ||||||||||||||||| |||||||||||||||||||| ||||    
T  43090167 tagggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgac-----aagaattggttcggctcgaaactcgactcgagttcaaaacgaa 43090073  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    ||          |||||||||||||||||||||||||||||    
T  43090072 catttttttgggctcgagttcggctcgtttaaagttcacga 43090032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 32179331 - 32179493
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcg 199  Q
    ||||||||| |||||||||||||||||  | ||  || |||||||||  |||||| |||||||||||||||||||| ||||||| || |||||  |  ||    
T  32179331 attagggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggctcgattcgataagaattggttcggctcgaaactcggcttgagtttgacacg 32179430  T
Q  200 aacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||         | ||||||||||||||||||||| ||||||||||||| ||||| |||||||    
T  32179431 aactattttttcagctcgagttcggctcgtttaaaattcacgaacagttcggttcggctcgtt 32179493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 156 - 262
Target Start/End: Complemental strand, 37441899 - 37441793
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttca 255  Q
    |||||||||||||||||||| ||||||| ||||||||| |  |||||         | ||||||||||||||||||||||||||||||||||| |||||     
T  37441899 gataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcg 37441800  T
Q  256 gctcgtt 262  Q
    |||||||    
T  37441799 gctcgtt 37441793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 42936610 - 42936651
Alignment:
Q  215 tcgagttcggctcgtttaaagttcacgaacagtttggttcag 256  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42936610 tcgagttcggctcgtttaaagttcacgaacagtttggttcag 42936651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 102 - 183
Target Start/End: Complemental strand, 45582239 - 45582158
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcg 183  Q
    ||||||| |||||||||||||||||||| ||||||| ||||||||| |||| | |||||| ||| |||| |||| |||||||    
T  45582239 tagggctggaaatgagtcgagtcgagtcgaatctgtatgagctcgactcgactcgataaggattagttcagctcgaaactcg 45582158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 24470554 - 24470506
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24470554 ctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 24470506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 426 - 477
Target Start/End: Complemental strand, 2334987 - 2334936
Alignment:
Q  426 catgcccccacgcacccttgtcctttgtatctttgatcctgtggtctgtgct 477  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||| ||||    
T  2334987 catgcacccacgcacccttgtcctttgaatctttgatcctgtggtctatgct 2334936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 259
Target Start/End: Original strand, 15014114 - 15014161
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||    
T  15014114 aactcgagttcggctcgtttaaagttcacgaacaatttggttcggctc 15014161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 21681754 - 21681671
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||| ||||||||||| || ||| |||||||| | |||| | ||||||||||||||| ||| |||||||| |||||||||    
T  21681754 gaaatgagccgagtcgagtcgaacctgcctgagctcaactcgactcgataagaattggttcagcttaaaactcggctcgagttc 21681671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 45654499 - 45654416
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||||||||||||| || ||| |||||||||| |||| | ||||||||||||||| |||  ||| ||| |||||||||    
T  45654499 gaaatgagtcgagtcgagtcgaacctgcctgagctcgactcgactcgataagaattggttcagcttgaaattcggctcgagttc 45654416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 97 - 188
Target Start/End: Complemental strand, 47603554 - 47603463
Alignment:
Q  97 cacattagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcg 188  Q
    |||||||||||| |||||||||||||||||  | || ||| ||||| |||  || | | |||||||||||||||||||| ||||||||||||    
T  47603554 cacattagggctggaaatgagtcgagtcgaaccgaacctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcgactcg 47603463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 31868907 - 31869049
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||||||   |||||||||||  |||| |  ||||||||||  ||||||| ||||||||||||||||| |  | |||        ||||||| |    
T  31868907 gagtcgagtcaaactcgtctgagctcggctcgactcaataagaattgactcggctcgaaactcgactcgagttcgatacaaaccattttttaaactcggg 31869006  T
Q  220 ttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||  | ||||| |||||||    
T  31869007 ttcggctcgtttaaagttcacgaacatctcggttcggctcgtt 31869049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 46265632 - 46265591
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  46265632 agttcggctcgtttaaagttcacgaacagtttggttcggctc 46265591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 149 - 245
Target Start/End: Original strand, 3576985 - 3577081
Alignment:
Q  149 tcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaaca 245  Q
    |||| ||||||||||||||||| |||| |||||||| | |||||| |  | ||||        ||||||||||||||||||||||||||||||||||    
T  3576985 tcgacttgataagaattggttcagctcgaaactcgatttgagttcgatacaaacattttatttaactcgagttcggctcgtttaaagttcacgaaca 3577081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 254
Target Start/End: Original strand, 15662407 - 15662442
Alignment:
Q  219 gttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||||||||||||||||||||||||    
T  15662407 gttcggctcgtttaaagttcacgaacagtttggttc 15662442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 25125439 - 25125396
Alignment:
Q  216 cgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  25125439 cgagttcggctcgtttaaagttcacaaacagtttggttcggctc 25125396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 262
Target Start/End: Complemental strand, 14770889 - 14770843
Alignment:
Q  216 cgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||  ||||||||||||| |||||||    
T  14770889 cgagttcggctcgtttaaagttcagaaacagtttggttcggctcgtt 14770843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 193
Target Start/End: Original strand, 35309009 - 35309099
Alignment:
Q  103 agggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||| ||||||||| |||||||  | || ||  ||||||||| ||||| | |||||||||||||||||||| |||||||  ||||||||    
T  35309009 agggctggaaatgagttgagtcgaaccgaacctacctgagctcggttcgactcgataagaattggttcggctcgaaactcggttcgagttc 35309099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 15305903 - 15305972
Alignment:
Q  123 tcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||| ||||  ||||||||||| |||| |  ||||||||||  ||||||||||||||||||||||||    
T  15305903 tcgagtcgaatccatctgagctcgactcgactcaataagaattgactcggctcaaaactcgactcgagtt 15305972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 30211772 - 30211853
Alignment:
Q  112 aatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||| ||||| |||||||| || | |||||||||||||  | ||||| |||| ||||||||| |||||| ||||||||||    
T  30211772 aatgagccgagttgagtcaaacctatatgagctcgattcggctcgataaaaattagttcggctcgaaactcaactcgagttc 30211853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 42916790 - 42916749
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  42916790 agttcggctcgcttaaagttcacgaacagtttggttcggctc 42916749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 203
Target Start/End: Original strand, 47982674 - 47982762
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaaca 203  Q
    |||||||||||||||||||| || |||||| ||||||| || |      |||||| ||||||| || |||||||||||||||||||| ||||||    
T  47982674 gaaatgagtcgagtcgagtcgaacctgtctaagctcgactcaac-----aagaatcggttcggttcgaaactcgactcgagttcaaaacgaaca 47982762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 14579055 - 14579019
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||||| |||||||||||||||||||    
T  14579055 agttcggctcgtttaaaattcacgaacagtttggttc 14579019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 23916246 - 23916282
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||||||| |||||||||||||||||    
T  23916246 agttcggctcgtttaaagtccacgaacagtttggttc 23916282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 44595832 - 44595915
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||| |||||||||||||||||  | || |||||||||||||| ||     ||||||||||||||||| || |||||||||| ||||||    
T  44595832 ggctggaaatgagtcgagtcgaaccgaacctgtctgagctcgactc-----gataagaattggttcggttcgaaactcgacttgagttc 44595915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 14579173 - 14579106
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattgg 167  Q
    ||||||||| ||||||||||||||||| || || |||| ||||||||| |||| | | ||||||||||    
T  14579173 attagggctggaaatgagtcgagtcgaatcgaacctgtatgagctcgactcgactcgttaagaattgg 14579106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 120 - 202
Target Start/End: Original strand, 7994764 - 7994846
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaac 202  Q
    |||||||||| || |||| |||| |||| || | | ||||||||||| ||| |||| ||||||||||||||||| || |||||    
T  7994764 gagtcgagtcgaacctgtttgagttcgactcaactcgataagaattgattcagctcgaaactcgactcgagttcgaaacgaac 7994846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 307
Target Start/End: Original strand, 7994907 - 7994962
Alignment:
Q  250 ggttcagctcgtttactcgaattgtatatttcacaaaccttttttttgtcaaaaatat 307  Q
    |||||| ||||||||||| ||  |||||||||||||||  ||||||||||||||||||    
T  7994907 ggttcaactcgtttactcaaacggtatatttcacaaac--tttttttgtcaaaaatat 7994962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 15014023 - 15014085
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcgg 172  Q
    ||||||||||||||||| |||||  ||||||||||||| ||||||   |||||||||| ||||    
T  15014023 gaaatgagtcgagtcgaatcaaacttgtctgagctcgactcgattcattaagaattggctcgg 15014085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 39577640 - 39577686
Alignment:
Q  101 ttagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcga 147  Q
    |||||||| ||||||||||||||||| || ||||| |||||||||||    
T  39577640 ttagggctggaaatgagtcgagtcgaatcgaatctatctgagctcga 39577686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 7595836 - 7595877
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||||||||||| ||| |||||||| ||||    
T  7595836 agttcggctcgtttaaagttcacggacaatttggttcggctc 7595877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 24470654 - 24470581
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| |||||||||||||||||  | || ||| |||||||||  || | | ||||||||||||||||||||    
T  24470654 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcaactcgataagaattggttcggctc 24470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 35810226 - 35810266
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||| |||||||||||||||||||| ||||    
T  35810226 agttcggctcgtttaa-gttcacgaacagtttggttcggctc 35810266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 50445516 - 50445573
Alignment:
Q  136 gtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||||||||||||| | | ||||||||| ||| |||| ||||||||||| |||||    
T  50445516 gtctgagctcgattcgactcgttaagaattgattcagctcgaaactcgactctagttc 50445573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 202
Target Start/End: Original strand, 7840748 - 7840839
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaac 202  Q
    |||||||||||||| || || |||  |||||| || || |||| | | |||||||||||||||||| ||| ||||||||||||| || |||||    
T  7840748 gaaatgagtcgagttgaatcgaattcgtctgaacttgactcgactcgttaagaattggttcggctcgaaa-tcgactcgagttcgaaccgaac 7840839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 160 - 192
Target Start/End: Complemental strand, 13645798 - 13645766
Alignment:
Q  160 agaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||||||||||| ||||||||||||||||    
T  13645798 agaattggttcggctcgaaactcgactcgagtt 13645766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 35309116 - 35309164
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||||||||||||| ||||||||| ||||||||||  |||| |||||||    
T  35309116 ctcgagttcggctcatttaaagtttacgaacagttccgttcggctcgtt 35309164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 195
Target Start/End: Complemental strand, 48575867 - 48575783
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaa 195  Q
    ||||||||||| |||| || ||  ||||||||||||| |||| | ||||||||||  || | ||| ||||||||||| |||||||    
T  48575867 aaatgagtcgaatcgaatcgaacatgtctgagctcgactcgactcgataagaatttatttgactcgaaactcgactcaagttcaa 48575783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 47)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 102 - 308
Target Start/End: Original strand, 1803172 - 1803375
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    |||||||||||||||||||||| ||     | ||||||||| ||||||||||| ||||| ||||||||||| || ||||| ||||||||||| |||||||    
T  1803172 tagggctagaaatgagtcgagttga-----acctgtctgagttcgattcgattcgataaaaattggttcggttcgaaacttgactcgagttcgaagcgaa 1803266  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtttactcgaattgtatatttcacaaacc--ttttttttgtc 299  Q
    |        || ||||||||||| ||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  1803267 cctttttttaagctcgagttcggttcgtttaaagttcactaagagttcggttcagctcgtttactcgaattgtatatttcacaaaccttttttttttgtc 1803366  T
Q  300 aaaaatatt 308  Q
    |||||||||    
T  1803367 aaaaatatt 1803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 40797162 - 40797296
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||| ||||  | |||||||||| | |||||           
T  40797162 gaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacatggctcgagttcacaacgaacctctttt 40797261  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaac 244  Q
      ||||||||||||| |||||||||||||||||||    
T  40797262 ctaactcgagttcgggtcgtttaaagttcacgaac 40797296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 48977004 - 48977164
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | |||||| |||| ||||  |||||| |||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  48977004 tagggctggaaatgagtcgagtcgaaccgaatctgcctgaactcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 48977103  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||||||||||||||| |||||||||| |||||||| |||||||    
T  48977104 ctattttttcagctcgagttcggctcgtttaaaattcacgaacaatttggttcggctcgtt 48977164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 102 - 203
Target Start/End: Original strand, 25133933 - 25134034
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| ||||||||||||||||| |||| | |||||||||||||||||||| |||| ||  |||||||| || ||||    
T  25133933 tagggctggaaatgagtcgagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcggctcgaaacccggttcgagttcgaaacgaa 25134032  T
Q  202 ca 203  Q
    ||    
T  25134033 ca 25134034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 9469428 - 9469587
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||||||||||||||| || || |||||||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  9469428 tagggctggaaatgagtcgagtcga-tcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 9469526  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||||| ||||||||||||||||||||||| | ||| |||||||    
T  9469527 ctattttttcagctcgagttcggatcgtttaaagttcacgaacagttcgattcggctcgtt 9469587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 19850132 - 19850292
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | || |||||||||||||  |||| | |||||  ||||||||||||| ||||||| ||||||||| |  ||||    
T  19850132 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataaacattggttcggctcgaaactcggctcgagttcgacacgaa 19850231  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  19850232 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 19850292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 22183763 - 22183923
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||||||||||| |||||||||  | || |||||||||||||  |||| |||||||||||| | ||||||||||||||||||||||||| |  ||||    
T  22183763 tagggctagaaatgaatcgagtcgaaccgaacctgtctgagctcggatcgacttgataagaatttgctcggctcaaaactcgactcgagttcgacacgaa 22183862  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||| || | |||||||||||||||||||||||| ||||| |||||||    
T  22183863 ctcttttttcagctcgaatttgactcgtttaaagttcacgaacagttcggttccgctcgtt 22183923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 49820386 - 49820538
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    ||||||| ||||||||| || || ||| |||||||||  |||| | |||||||||||||||||||| ||||||||||||||||| |  |||||           
T  49820386 gaaatgaatcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcgacacgaactattttt 49820485  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | |||||||||||||||||||||||||||||||||||  |||| |||||||    
T  49820486 tcagctcgagttcggctcgtttaaagttcacgaacagttcagttcggctcgtt 49820538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 50605463 - 50605615
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | || |||||||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  |||||           
T  50605463 gaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttt 50605562  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | ||||||||||||| ||||||||||||||||||||| ||||| |||||||    
T  50605563 tcagctcgagttcggcttgtttaaagttcacgaacagttcggttcggctcgtt 50605615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 121 - 255
Target Start/End: Complemental strand, 24009551 - 24009417
Alignment:
Q  121 agtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagt 220  Q
    ||||||||| ||||| |||||||||||  ||||| |||||||||||||||  ||| |||| ||||||||||||||| |||||         | |||||||    
T  24009551 agtcgagtcgaatctatctgagctcgacacgattcgataagaattggttcaactcgaaacccgactcgagttcaaaacgaaccttttttttagctcgagt 24009452  T
Q  221 tcggctcgtttaaagttcacgaacagtttggttca 255  Q
    || ||||||||||||||||||||||||| ||||||    
T  24009451 tctgctcgtttaaagttcacgaacagttcggttca 24009417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 51994083 - 51994183
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||||||||||||||| || |||| |||||||||||| |||| | | ||||||||||||| |||| ||||||||||||||||| || ||||    
T  51994083 tagggctggaaatgagtcgagtcgaatcgaatccgtctgagctcgactcgactcgttaagaattggttcagctcgaaactcgactcgagttcgaaccgaa 51994182  T
Q  202 c 202  Q
    |    
T  51994183 c 51994183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 101 - 192
Target Start/End: Original strand, 52705592 - 52705683
Alignment:
Q  101 ttagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||| |||||||||||||||||||| ||  ||||||||||||  |||| | |||||||||||||||||||| |||||||| |||||||    
T  52705592 ttagggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgattcgagtt 52705683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 262
Target Start/End: Original strand, 44377628 - 44377765
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| || |||||||||||||| ||     |||||||||||||||||||| ||||||||||||||||  || |||||         |||| |||    
T  44377628 gagtcgagtcgaacctgtctgagctcgactc-----gataagaattggttcggctcgaaactcgactcgagtttgaaacgaaccttttctctaacttgag 44377722  T
Q  220 ttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||  ||||||| |||||||    
T  44377723 ttcggctcgtttaaagttcacgaacaacttggttcggctcgtt 44377765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 101 - 193
Target Start/End: Complemental strand, 4275683 - 4275591
Alignment:
Q  101 ttagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||| | |||||||| ||||||||||| |||||| |||||||||| |||| | ||||||||||||||| |||| ||||||| |||||||||    
T  4275683 ttagggttggaaatgagccgagtcgagtcgaatctgcctgagctcgactcgactcgataagaattggttcagctcgaaactcggctcgagttc 4275591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 104 - 191
Target Start/End: Original strand, 7505426 - 7505513
Alignment:
Q  104 gggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagt 191  Q
    ||||| |||||||||||||||||||| ||  ||||||||||||  |||| | ||||||||||| |||||||| |||||||||||||||    
T  7505426 gggctggaaatgagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattgattcggctcgaaactcgactcgagt 7505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 53369070 - 53369222
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | |||||| ||||| |||  || | | |||||||||||||||||||| ||||||| ||||||||| |  |||||           
T  53369070 gaaatgagtcgagtcgaaccgaatctgcctgagttcggctcaactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttt 53369169  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | ||||||||||||||||||||||||||||||| ||| ||||| |||||||    
T  53369170 tcagctcgagttcggctcgtttaaagttcacgaactgttcggttcggctcgtt 53369222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 46945297 - 46945225
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||||| || |||||||||||||| || | | |||||||||||||||||||| ||||||||||||||||    
T  46945297 gagtcgagtcgaacctgtctgagctcgactcaactcgataagaattggttcggctcgaaactcgactcgagtt 46945225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 43386534 - 43386686
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||    || |||||||||||||| |||| | |||||||||| | ||||||  ||||||||||||||||| |  ||||    
T  43386534 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcgactcgactcgataagaatttgctcggcttgaaactcgactcgagttcgacacgaa 43386633  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |         | ||||| |||| |||||||||||||||||||||||| |||||    
T  43386634 ctcttttttcagctcgaattcgactcgtttaaagttcacgaacagttcggttc 43386686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 121 - 240
Target Start/End: Complemental strand, 50711557 - 50711443
Alignment:
Q  121 agtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagt 220  Q
    ||||||||| ||||||||||||||||| ||     ||||||||||||||||||||||||||||  ||||||||||| ||||          | |||||||    
T  50711557 agtcgagtcgaatctgtctgagctcgactc-----gataagaattggttcggctcaaaactcggttcgagttcaaaacgaatcttttttctagctcgagt 50711463  T
Q  221 tcggctcgtttaaagttcac 240  Q
    ||||||||||||||||||||    
T  50711462 tcggctcgtttaaagttcac 50711443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 36543406 - 36543454
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  36543406 ctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 36543454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 44792821 - 44792773
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  44792821 ctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 44792773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 121 - 262
Target Start/End: Complemental strand, 51409235 - 51409094
Alignment:
Q  121 agtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagt 220  Q
    ||||||||| ||  ||||||||||||| |||| | |||||||||| ||||||||| |||||||| |||||||| |  |||||         | |||||||    
T  51409235 agtcgagtcgaacttgtctgagctcgactcgactcgataagaatttgttcggctcgaaactcgattcgagttcgacacgaactatttttttagctcgagt 51409136  T
Q  221 tcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||| ||||||||||||||||| |||||| || || |||||||    
T  51409135 tcgactcgtttaaagttcacgtacagttcggctcggctcgtt 51409094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 21436315 - 21436467
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | || ||||||||| |||  |||| | ||||||||||| |||||||| ||||||| ||||| ||| |  || ||           
T  21436315 gaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaattgattcggctcgaaactcggctcgaattcgacacggactattttt 21436414  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | ||||||||||||||||||||||||||||||||||| ||||  |||||||    
T  21436415 tcagctcgagttcggctcgtttaaagttcacgaacagttcggtttggctcgtt 21436467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 184
Target Start/End: Complemental strand, 11055973 - 11055891
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcga 184  Q
    |||||||||||||||||||||||||||| ||||  |||||| |||| |||| | | |||||||||  ||||||| ||||||||    
T  11055973 tagggctagaaatgagtcgagtcgagtcgaatccatctgagttcgactcgactcggtaagaattgactcggctcgaaactcga 11055891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 12673799 - 12673718
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||||||||||||||| || |||||||||||||| || | |   |||||| | ||||||||| ||||||||||||||||    
T  12673799 aaatgagtcgagtcgagtcgaacctgtctgagctcgactcaactctttaagaaatagttcggctcgaaactcgactcgagtt 12673718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 43812700 - 43812659
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  43812700 agttcggctcgtttaaagttcacgaacagtttggttcggctc 43812659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 55892811 - 55892738
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| ||||||||||||||||| || ||||| ||||||||||| |||| | |||||||||| | |||||||    
T  55892811 tagggctggaaatgagtcgagtcgaatcgaatctatctgagctcgactcgactcgataagaatttgctcggctc 55892738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 12790188 - 12790152
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtt 248  Q
    |||||||||||||||||||||||||||||||||||||    
T  12790188 aactcgagttcggctcgtttaaagttcacgaacagtt 12790152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 45674404 - 45674452
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||||||||||||||||||||||||||||| |||| ||||| |||||||    
T  45674404 ctcgagttcggctcgtttaaagttcacgaatagttcggttcggctcgtt 45674452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 54742197 - 54742237
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  54742197 ctcgagttcggttcgtttaaagttcacgaacagtttggttc 54742237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 12790286 - 12790213
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||  ||||||||||||||||  | || |||||||||||||  |||||| |||||||||||| |||||||    
T  12790286 tagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgattcgataagaattggctcggctc 12790213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 156 - 254
Target Start/End: Complemental strand, 28266830 - 28266732
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||||||||| | ||||||| ||||||||||||||||| |  |||||         | |||||||||| |||||||||||||||||||||||| |||||    
T  28266830 gataagaatttgctcggctcgaaactcgactcgagttcgacacgaactctttttttagctcgagttcgactcgtttaaagttcacgaacagttcggttc 28266732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 36156934 - 36156893
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  36156934 agttcgactcgtttaaagttcacgaacagtttggttcggctc 36156893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 44792921 - 44792848
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| |||||||||||||||||  | || |||| ||||||||  |||| | ||||||||||||||||||||    
T  44792921 tagggctggaaatgagtcgagtcgaaccgaacctgtatgagctcggctcgactcgataagaattggttcggctc 44792848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 25103252 - 25103182
Alignment:
Q  131 aatctgtctgagctcgattcgatttgataaga---attggttcggctcaaaactcgactcgagttcaaagc 198  Q
    |||||||||||||||||||| |||||||||||   ||| ||||||||||||| | || |||||||| ||||    
T  25103252 aatctgtctgagctcgattcaatttgataagaaatatttgttcggctcaaaatttgattcgagttcgaagc 25103182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 32398401 - 32398365
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||| |||||||||||||||||||||    
T  32398401 agttcggctcgtttagagttcacgaacagtttggttc 32398365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 48151823 - 48151735
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaac 244  Q
    |||||||||||| ||||||||||| | ||||||| |||||  |||||         |||||||||||| ||||||||||||||||||||    
T  48151823 gataagaattggctcggctcaaaatttgactcgaattcaatacgaacctttttcctaactcgagttcgactcgtttaaagttcacgaac 48151735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 189
Target Start/End: Original strand, 52812967 - 52813054
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcga 189  Q
    |||||||| ||||||||||||||||  | || ||||||||| |||  |||| | |||||||||| | ||||||  |||||||||||||    
T  52812967 tagggctaaaaatgagtcgagtcgaaccgaacctgtctgagttcggctcgactcgataagaatttgctcggcttgaaactcgactcga 52813054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 259
Target Start/End: Complemental strand, 50147372 - 50147330
Alignment:
Q  217 gagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||| ||||||||||||||| ||||||||||||| ||||    
T  50147372 gagttcggttcgtttaaagttcacaaacagtttggttcggctc 50147330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 6874979 - 6874934
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||| |||| ||||||||||| ||||||||||||| ||||    
T  6874979 ctcgagttcgactcgcttaaagttcacaaacagtttggttcggctc 6874934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 18990302 - 18990343
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggtt 253  Q
    ||||| |||||||||||||||||||||||||| || ||||||    
T  18990302 aactcaagttcggctcgtttaaagttcacgaatagattggtt 18990343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 9222906 - 9222842
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||||||||| | || || |||||||||||||| || | |  |||||||||||||||||||    
T  9222906 aaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctc 9222842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 16743205 - 16743169
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  16743205 gataagaattggttcggctcgaaactcgactcaagtt 16743169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 105 - 193
Target Start/End: Original strand, 22720747 - 22720835
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||| ||||||| ||||||||| || ||   |||||||||||  || | | |||||||||||||||||||| ||||||||  |||||||    
T  22720747 ggctggaaatgaatcgagtcgaatcgaactagtctgagctcggctcaactcgataagaattggttcggctcgaaactcgatacgagttc 22720835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 174
Target Start/End: Original strand, 45674312 - 45674376
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggct 174  Q
    |||||||||||||||||  | || ||| |||||||||  |||| | |||||||||||||||||||    
T  45674312 gaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggct 45674376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 48340270 - 48340234
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||||| |||||||||||||||| |||||||||||||    
T  48340270 agttcgactcgtttaaagttcacaaacagtttggttc 48340234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 52813111 - 52813151
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||| |||| |||||||||||||||||||||||| |||||    
T  52813111 ctcgaattcgcctcgtttaaagttcacgaacagttcggttc 52813151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 1e-39; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 102 - 246
Target Start/End: Original strand, 25252874 - 25253018
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    |||||||||||||||||||||||||||| || |||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||||||  ||||    
T  25252874 tagggctagaaatgagtcgagtcgagtcgaacctgtctgagctcaactcgactcgataagaattggttcggctcaaaactcgactcgagttcaatacgaa 25252973  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacag 246  Q
    |        || |||||||||||||||||||||||||||||||||    
T  25252974 ctttttgttaagctcgagttcggctcgtttaaagttcacgaacag 25253018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 334 - 421
Target Start/End: Original strand, 49026113 - 49026200
Alignment:
Q  334 gtaaaactatgaagcgtacattactactgcagcacaatccatatactacatgtatagcttttacattataattgagatgcacttctct 421  Q
    ||||||||||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  49026113 gtaaaactatgaagcatacattactactgcagcatagtccatatactacatatatagcttttacatgataattgagatgcacttctct 49026200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 102 - 202
Target Start/End: Original strand, 5418043 - 5418143
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||||| ||  |||||||| |||  | || | |||||||||||||||||||| |||||||||||||||||||| ||||    
T  5418043 tagggctggaaatgagtcgagtcgagtcgaacttgtctgagttcggcttgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaa 5418142  T
Q  202 c 202  Q
    |    
T  5418143 c 5418143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 262
Target Start/End: Complemental strand, 39471219 - 39471059
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | || |||||||| ||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  39471219 tagggctggaaatgagtcgagtcgaaccgaacctgtctgaactcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 39471120  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||| ||||||||||||||||||||||||| | ||| |||||||    
T  39471119 ctattttttcagctcgagttcagctcgtttaaagttcacgaacagttcgattcggctcgtt 39471059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 40942913 - 40943036
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||||||||||||||||| || | | |||||||||||||||| ||| ||||||| |||||||||||| |||||         | ||||||    
T  40942913 gagtcgagtcgaatctgtctgagctcgactcaactcgataagaattggttcgactcgaaactcggctcgagttcaaaacgaac-ctttttctagctcgag 40943011  T
Q  220 ttcggctcgtttaaagttcacgaac 244  Q
    |||||||| ||||||||||||||||    
T  40943012 ttcggctcatttaaagttcacgaac 40943036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 175
Target Start/End: Complemental strand, 54433019 - 54432946
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| ||||||||||||||| |||| ||| ||||||||||||| |||| | ||||||||||||||||||||    
T  54433019 tagggctggaaatgagtcgagtcaagtcgaatatgtctgagctcgactcgactcgataagaattggttcggctc 54432946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 102 - 194
Target Start/End: Complemental strand, 27040684 - 27040592
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttca 194  Q
    ||||||| |||||||||||||||||||| ||  ||| ||||||| | |||| | | ||||| |||||||||||| ||||||||||||||||||    
T  27040684 tagggctggaaatgagtcgagtcgagtcgaacttgtttgagctcaactcgactcgttaagatttggttcggctcgaaactcgactcgagttca 27040592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 105 - 193
Target Start/End: Complemental strand, 38644361 - 38644273
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||| ||||||||| |||||||  | || |||||||||||||  |||| | |||||||||| |||||||||||||||||||||||||||    
T  38644361 ggctggaaatgagtggagtcgaaccgaacctgtctgagctcggctcgactagataagaatttgttcggctcaaaactcgactcgagttc 38644273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 32688567 - 32688719
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||| ||  | ||||||||||||||||  |||| | ||||| |||||||||||||| ||||||  ||||||||  |   ||||           
T  32688567 gaaatgagtcgagttgaaccgaatctgtctgagctcggctcgactcgataaaaattggttcggctcgaaactcagctcgagtttgacatgaactattttt 32688666  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  32688667 tcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 32688719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 20407881 - 20407799
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||||||||||||||| ||  ||| ||||||||  |||| | |||||| ||||||||||||| |||||||||||||||||    
T  20407881 aaatgagtcgagtcgagtccaacgtgtttgagctcggctcgactcgataagtattggttcggctcgaaactcgactcgagttc 20407799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 53530181 - 53530140
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  53530181 agttcggctcgtttaaagttcacgaacagtttggttcagctc 53530140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 45714219 - 45714263
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||||| ||||||||||||||||||||||||||||||||||||||    
T  45714219 agttcgactcgtttaaagttcacgaacagtttggttcagctcgtt 45714263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 52198776 - 52198936
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | || |||||||||||||  |||| | |||| ||||  | ||||||| ||||||||||||||||| |  ||||    
T  52198776 tagggctggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgatatgaatctgctcggctcgaaactcgactcgagttcgacacgaa 52198875  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||| || | |||||||||||||||| ||||||||||||| |||||||    
T  52198876 ctcttttttcagctcgaatttgactcgtttaaagttcacaaacagtttggttcggctcgtt 52198936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 23206965 - 23206925
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  23206965 ctcgagttcggctcgtttaaagttcacgaacagttcggttc 23206925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 30662885 - 30662813
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||||  || ||||||||||||||||||| | ||||||||||| ||||| || |||||| |||||||||    
T  30662885 gagtcgagttgaacctgtctgagctcgattcgactcgataagaattgattcggttcgaaactcaactcgagtt 30662813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 105 - 192
Target Start/End: Original strand, 7834065 - 7834147
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||| |||||||||||||||||||| || |||||||| ||||| ||     ||||||||||||||| ||||||||||| | |||||||    
T  7834065 ggctggaaatgagtcgagtcgagtcgaacctgtctgaactcgactc-----gataagaattggttcagctcaaaactcaattcgagtt 7834147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 242
Target Start/End: Original strand, 30740732 - 30740872
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | ||  ||||||||||  | | || | |||||||| ||||| ||||| ||||||||||||||||| |  ||||    
T  30740732 tagggctggaaatgagtcgagtcgaaccgaacttgtctgagctttacttgactcgataagaaatggtttggctcgaaactcgactcgagttcgacacgaa 30740831  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    |         | |||||||||||||||||||||||||||||    
T  30740832 ccttttttttagctcgagttcggctcgtttaaagttcacga 30740872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 135 - 246
Target Start/End: Original strand, 33895949 - 33896060
Alignment:
Q  135 tgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaa 234  Q
    ||||||||||||| |||| |  ||||||| |||||| |||| ||||||||||||||||| |  |||||         | ||||| |||||||||||||||    
T  33895949 tgtctgagctcgactcgactcaataagaaatggttcagctccaaactcgactcgagttcgacacgaaccttttttttagctcgaattcggctcgtttaaa 33896048  T
Q  235 gttcacgaacag 246  Q
    ||||||||||||    
T  33896049 gttcacgaacag 33896060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 33439267 - 33439226
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||| |||||||||||||||||||||||||||||| ||||    
T  33439267 agttcgactcgtttaaagttcacgaacagtttggttcggctc 33439226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 39133776 - 39133869
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||  |||||| |||||||||    || ||||||||||||   |||| | |||||||||||||||||||| ||||||| |||||||||    
T  39133776 attagggctgaaaatgattcgagtcgaactgaacctgtctgagctcagctcgactcgataagaattggttcggctcgaaactcggctcgagttc 39133869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 45994906 - 45994947
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||| ||||||||||||| ||||    
T  45994906 agttcggctcgtttaaagttcacaaacagtttggttcggctc 45994947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 101 - 190
Target Start/End: Complemental strand, 46294378 - 46294289
Alignment:
Q  101 ttagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgag 190  Q
    |||||||| |||||||||||||||||||| ||   |||||||||||  ||||    |||||||||||||| | || ||||||||||||||    
T  46294378 ttagggctggaaatgagtcgagtcgagtcgaactcgtctgagctcggctcgacgcaataagaattggttcagttcgaaactcgactcgag 46294289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 52934244 - 52934317
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||| ||||  ||||||||||| |||| | |||||||||||  ||||||| |||||||||| ||||||    
T  52934244 gagtcgagtcgaatccatctgagctcgactcgactcgataagaattgactcggctcgaaactcgacttgagttc 52934317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 54394077 - 54394036
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||||||||||||||||||| |||| ||||    
T  54394077 agttcggctcgtttaaagttcacgaacagtttagttcggctc 54394036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 138 - 262
Target Start/End: Original strand, 12710096 - 12710220
Alignment:
Q  138 ctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa-cannnnnnnaaactcgagttcggctcgtttaaagt 236  Q
    |||||||||| |||| | ||||||||||||| |||||| ||||||||||||||||  || |||| |         |||||||||||||||||||||||||    
T  12710096 ctgagctcgactcgactcgataagaattggt-cggctcgaaactcgactcgagtttgaaacgaaccttttttcttaactcgagttcggctcgtttaaagt 12710194  T
Q  237 tcacgaacagtttggttcagctcgtt 262  Q
    || ||||||  | ||||| |||||||    
T  12710195 tcgcgaacaactcggttcggctcgtt 12710220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 7029135 - 7029226
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| ||||||||||||||| |||| ||    |||||| |||| |||| | |||||||||| |||| |||| ||||||| |||||||||    
T  7029135 tagggctggaaatgagtcgagtccagtcgaactcatctgagttcgactcgactcgataagaatttgttcagctcgaaactcggctcgagttc 7029226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 26050162 - 26050112
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||| ||||||  | ||||| |||||||    
T  26050162 aactcgagttcggctcgtttaaagttcgcgaacaactcggttcggctcgtt 26050112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 7834171 - 7834212
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttca 255  Q
    ||||||||| |||| |||||||||||||||||||| ||||||    
T  7834171 ctcgagttcagctcatttaaagttcacgaacagttcggttca 7834212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 19561544 - 19561491
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgat 153  Q
    ||||||||| |||||||||||||||||||  |||  |||||||||||| |||||    
T  19561544 attagggctggaaatgagtcgagtcgagttgaattcgtctgagctcgactcgat 19561491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 171
Target Start/End: Original strand, 41609314 - 41609383
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcg 171  Q
    ||||||| |||||||||||||||||  | || ||| |||||||||  |||| | ||||||||||||||||    
T  41609314 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcg 41609383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 39943838 - 39943782
Alignment:
Q  136 gtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||||||  |||| | ||||||||||||||| |||| ||||||| ||||||||    
T  39943838 gtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagtt 39943782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 6e-29; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 100 - 262
Target Start/End: Original strand, 7957052 - 7957214
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcg 199  Q
    ||||||||| |||||||||||||||||  | || |||||||||||||  |||| | |||||||||||||||||||| ||||||| |||||||||||  ||    
T  7957052 attagggctggaaatgagtcgagtcgacccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcaacacg 7957151  T
Q  200 aacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||         | ||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  7957152 aactattttttcagctcgagttcagctcgtttaaagttcacgaacagttcggttcggctcgtt 7957214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 10346212 - 10346372
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    |||||||||||||||||| ||||||  | || |||| ||||||||  |||||| |||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  10346212 tagggctagaaatgagtcaagtcgaaccgaacctgtttgagctcggctcgattcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 10346311  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  10346312 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 10346372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 7436700 - 7436859
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    |||||||  |||| ||||||||||| || || |||||||||||||| |||| | |||||||| ||||||||||| |||||| |||||||||  || ||||    
T  7436700 tagggctgaaaataagtcgagtcgaatcgaacctgtctgagctcgactcgactcgataagaaatggttcggctcgaaactccactcgagtttgaaacgaa 7436799  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         ||||||||||||||||||||||||||||||| ||  |||||||||||||||    
T  7436800 c-cttttttcaactcgagttcggctcgtttaaagttcacgagcaacttggttcagctcgtt 7436859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 13311366 - 13311490
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| | ||||||||||||||| |||| | |||||||||||||||| |||||||||||  |||||||| || |||||         | ||||||    
T  13311366 gagtcgagtcgagtctgtctgagctcgactcgactcgataagaattggttcgactcaaaactcggttcgagttcgaaacgaaccttttttctagctcgag 13311465  T
Q  220 ttcggctcgtttaaagttcacgaac 244  Q
    |||||||||||||||||||||||||    
T  13311466 ttcggctcgtttaaagttcacgaac 13311490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 33109845 - 33109932
Alignment:
Q  115 gagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaac 202  Q
    ||||||||||||||| ||  ||||||||||||  |||| | |||||||||||||||||||| |||||||||||||||||||| |||||    
T  33109845 gagtcgagtcgagtcgaacttgtctgagctcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaac 33109932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 472835 - 472986
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnn 210  Q
    |||||||||||||||| |||||| ||| ||||||||| |||| |||||||||||| | || | |  ||||||||||| ||||| |  |||||            
T  472835 aaatgagtcgagtcgaatcaaatatgtatgagctcgactcgacttgataagaatttgctcagtttgaaactcgactcaagttcgacacgaactctttttt 472934  T
Q  211 aaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
     | |||||||||| |||||||||||||||||||||||||| |||||||||||    
T  472935 cagctcgagttcgactcgtttaaagttcacgaacagtttgattcagctcgtt 472986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 100 - 193
Target Start/End: Original strand, 6998574 - 6998667
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||| || |||||||||||||||||  | || |||||||||||||  |||| | |||||||||| | ||||||| |||||||||||||||||    
T  6998574 attaggactggaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaatttgctcggctcgaaactcgactcgagttc 6998667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 110 - 260
Target Start/End: Original strand, 18961853 - 18962003
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    ||||||||||||||| | || || ||| |||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  | |||           
T  18961853 gaaatgagtcgagtcaaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaactattttt 18961952  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcg 260  Q
      | | |||||||| |||||||||||||||||||||||| ||||| |||||    
T  18961953 tcagcccgagttcgactcgtttaaagttcacgaacagttcggttcggctcg 18962003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 262
Target Start/End: Original strand, 6998658 - 6998707
Alignment:
Q  213 actcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||| |||||||||||||||||||||||| ||||| |||||||    
T  6998658 actcgagttcgactcgtttaaagttcacgaacagttcggttcggctcgtt 6998707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 10962446 - 10962405
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  10962446 agttcggctcgtttaaagttcacgaacagtttggttcggctc 10962405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 12428097 - 12428189
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtt 248  Q
    ||||||||||| |||||||| ||||||||||||||||| |  |||||        || |||||||||| ||||||||||||| ||||||||||    
T  12428097 gataagaattgattcggctcgaaactcgactcgagttcgatacgaactttttgttaagctcgagttcgactcgtttaaagtttacgaacagtt 12428189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 468
Target Start/End: Complemental strand, 15390454 - 15390412
Alignment:
Q  426 catgcccccacgcacccttgtcctttgtatctttgatcctgtg 468  Q
    ||||| ||||||||||||||||||||| |||||||||||||||    
T  15390454 catgcacccacgcacccttgtcctttgaatctttgatcctgtg 15390412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 27925506 - 27925547
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||| ||||||||||||||||||| ||||    
T  27925506 agttcggctcgtttaaaattcacgaacagtttggttcggctc 27925547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 4442127 - 4442044
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||||||||||  | || |||||||||||| | |||| | ||||||||||  |||||||| |||||| |||| |||||    
T  4442127 gaaatgagtcgagtcgaaccgaacctgtctgagctcaactcgactcgataagaattaattcggctcgaaactcaactcaagttc 4442044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 172
Target Start/End: Complemental strand, 10962559 - 10962492
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcgg 172  Q
    |||| ||||||||||||||||| || || || ||||||||||| ||||||   |||||||||||||||    
T  10962559 ggctggaaatgagtcgagtcgaatcgaacctatctgagctcgactcgattcattaagaattggttcgg 10962492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 5641242 - 5641201
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggtt 253  Q
    ||||| ||| |||||||||||||||||||||||| |||||||    
T  5641242 aactcaagtacggctcgtttaaagttcacgaacaatttggtt 5641201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 8597489 - 8597452
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  8597489 gataagaattggttcagctcaaaactcgacttgagttc 8597452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 255
Target Start/End: Complemental strand, 9951414 - 9951377
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttca 255  Q
    ||||||| || |||||||||||||||||||||||||||    
T  9951414 agttcggttcatttaaagttcacgaacagtttggttca 9951377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 17493357 - 17493316
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||| ||||||||||||| | |||||||||||||||    
T  17493357 agttcggctcatttaaagttcacggatagtttggttcagctc 17493316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 193
Target Start/End: Original strand, 22295414 - 22295447
Alignment:
Q  160 agaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||||||||| |||||||||||||||||    
T  22295414 agaattggttcggctcgaaactcgactcgagttc 22295447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 26644005 - 26644046
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||||||| |||||||| ||||||| ||||    
T  26644005 agttcggctcgtttaaagttgacgaacaggttggttcggctc 26644046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 26749971 - 26750012
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||||||| |||||||| ||||||| ||||    
T  26749971 agttcggctcgtttaaagttgacgaacaggttggttcggctc 26750012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 100 - 242
Target Start/End: Complemental strand, 2647742 - 2647600
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcg 199  Q
    ||||||||| |||||||||||||||||||| ||| ||||||| ||||  |||| | |||||||||||||||||||| |||||||||||||||||||| |     
T  2647742 attagggctggaaatgagtcgagtcgagtcgaatttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacc 2647643  T
Q  200 aacannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    |||           |||||||||||||||||||||||||||||    
T  2647642 aacctttttttgggctcgagttcggctcgtttaaagttcacga 2647600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 27633142 - 27633302
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | || ||| |||||||||  |||| |||||||||||||||||||||| ||||||| ||| |||||||  | ||    
T  27633142 tagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgacttgataagaattggttcggctcgaaactcggctcaagttcaacacaaa 27633241  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  27633242 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 27633302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 134 - 262
Target Start/End: Original strand, 12139398 - 12139526
Alignment:
Q  134 ctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaa 233  Q
    ||||||||||||| ||||| | |||||||||||||||||||| ||||||| ||||||||| |  |||||         | ||||||||||||||||||||    
T  12139398 ctgtctgagctcggttcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttttcagctcgagttcggctcgtttaa 12139497  T
Q  234 agttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||| ||| |||||||||||||    
T  12139498 agttcacgaactgttcggttcagctcgtt 12139526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 36538077 - 36538237
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||    || |||||||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  36538077 tagggctggaaatgagtcgagtcgaactgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36538176  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | |||||||| |||||||||||||||||||||||||| ||||| |||||||    
T  36538177 ctattttttcagctcgagtttggctcgtttaaagttcacgaacagttcggttcggctcgtt 36538237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 20986072 - 20986224
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | || |||||||||||||  |||| | |||||||||||||||||||| ||||||| || |||||| |  |||||           
T  20986072 gaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggcttgagttcgacacgaactattttt 20986171  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | |||||||||||||||||||||||||||||||||||  |||| |||||||    
T  20986172 tcagctcgagttcggctcgtttaaagttcacgaacagttctgttcggctcgtt 20986224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 41958542 - 41958707
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagt-----caaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaa 196  Q
    ||||||| |||||||||||||||||||     | || ||| | ||||||| ||||| | ||||| |||||||||||||| ||||||| ||||||||| |     
T  41958542 tagggctggaaatgagtcgagtcgagttgaaccgaacctgcccgagctcggttcgactcgataaaaattggttcggctcgaaactcggctcgagttcgac 41958641  T
Q  197 gcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
     |||||         | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  41958642 acgaactattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 41958707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 111 - 262
Target Start/End: Original strand, 26435776 - 26435927
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnn 210  Q
    ||||||||||||||||  | ||||||||||||||||  |||||| ||||||||||||||||| || |||||||  |||||||| |  ||||             
T  26435776 aaatgagtcgagtcgaaccgaatctgtctgagctcggctcgattcgataagaattggttcggttcgaaactcggttcgagttcgacacgaaatatttttt 26435875  T
Q  211 aaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
     |||||||||||| || |||||||||||||||||| || ||||| |||||||    
T  26435876 caactcgagttcgacttgtttaaagttcacgaacaattcggttcggctcgtt 26435927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 40458387 - 40458472
Alignment:
Q  157 ataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacga 242  Q
    ||||||| || |||||||||||||||||||||||||| || ||||||        ||||||||||||||||||||||| |||||||    
T  40458387 ataagaaatgattcggctcaaaactcgactcgagttcgaaacgaacatttttttcaactcgagttcggctcgtttaaaattcacga 40458472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 20204415 - 20204376
Alignment:
Q  215 tcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  20204415 tcgagttcggctcgtttaaagttcacgaacagtttggttc 20204376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 11027397 - 11027439
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||| |||||||||||||||||||||||||||||||||||||    
T  11027397 aactcaagttcggctcgtttaaagttcacgaacagtttggttc 11027439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 30711567 - 30711608
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  30711567 agttcggctcgtttaaagttcacgaacagtttggttcggctc 30711608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 38410266 - 38410221
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  38410266 ctcgagttaggctcgtttaaagttcacgaacagtttggttcggctc 38410221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 40675188 - 40675256
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||| ||  |||||||||||||||||||     ||||||||||||||||| |||||||||||||||||    
T  40675188 gagtcgagtcgaacttgtctgagctcgattcgat-----aagaattggttcggctcgaaactcgactcgagttc 40675256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 192
Target Start/End: Original strand, 41648740 - 41648833
Alignment:
Q  99 cattagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||||||  ||||||||||||||||||| || ||||||||| | || |  | | ||||| ||||||||| |||||||| ||||||||||||    
T  41648740 cattagggctgaaaatgagtcgagtcgagtcgaaactgtctgagtttgacttaactcgataaaaattggttcagctcaaaattcgactcgagtt 41648833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 33164588 - 33164544
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  33164588 agttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 33164544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 33830990 - 33831038
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||||||||||||||||||||||||||||||| || ||||| |||||||    
T  33830990 ctcgagttcggctcgtttaaagttcacgaacaattcggttcggctcgtt 33831038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 34064242 - 34064281
Alignment:
Q  215 tcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  34064242 tcgagttcggctcgtttaaagttcacgaacagttcggttc 34064281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 44741404 - 44741345
Alignment:
Q  134 ctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||||||  |||| |||||||||||| | ||||||| |||||||||||||||||    
T  44741404 ctgtctgagctcggctcgacttgataagaatttgctcggctcgaaactcgactcgagttc 44741345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 472
Target Start/End: Original strand, 35039071 - 35039117
Alignment:
Q  426 catgcccccacgcacccttgtcctttgtatctttgatcctgtggtct 472  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||||||    
T  35039071 catgcacccacgcacccttgttctttgaatctttgatcctgtggtct 35039117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Original strand, 33830898 - 33830963
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||||||||||||  | || |||||||||||||  |||| | ||||||||||||||||||||    
T  33830898 gaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcgataagaattggttcggctc 33830963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 34116777 - 34116736
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  34116777 agtttggctcgtttaaagttcacgaacagtttggttcggctc 34116736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 244
Target Start/End: Complemental strand, 3409879 - 3409847
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaac 244  Q
    |||||||||||||||||||||||||||||||||    
T  3409879 aactcgagttcggctcgtttaaagttcacgaac 3409847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 250
Target Start/End: Original strand, 33475734 - 33475770
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttg 250  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33475734 ctcgagttcggctcgtttaaagtttacgaacagtttg 33475770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 102 - 152
Target Start/End: Original strand, 1093914 - 1093964
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcga 152  Q
    ||||||| |||||||||||||||||||| || ||||||||| |||| ||||    
T  1093914 tagggctggaaatgagtcgagtcgagtcgaacctgtctgagttcgactcga 1093964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 29478041 - 29478127
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgact 186  Q
    ||||||||| |||||||| |||||| || | ||   ||||||||||  ||||| |  |||||| |||||||||||||||||||||||    
T  29478041 attagggctggaaatgagacgagtcaagccgaactcgtctgagctcagttcgactcaataagatttggttcggctcaaaactcgact 29478127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 39689671 - 39689712
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  39689671 agttcggctcctttaaagttcacgatcagtttggttcggctc 39689712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 262
Target Start/End: Original strand, 18053512 - 18053556
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||| |||| ||||||| || |||||    
T  18053512 agttcggctcgtttaaagttcacaaacaatttggttaagttcgtt 18053556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 102 - 259
Target Start/End: Original strand, 18710 - 18867
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||||||||||||  | ||||||| ||||||||  |||| | ||||||||||||||||||||||||||||  |||||||| |  ||||    
T  18710 tagggctggaaatgagtcgagtcgaaccgaatctgtttgagctcggctcgactcgataagaattggttcggctcaaaactcggttcgagttcgacacgaa 18809  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |         | ||||||||||||||||||||||||||||||||||| ||||| ||||    
T  18810 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctc 18867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 18250769 - 18250634
Alignment:
Q  119 cgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcga 218  Q
    ||||||||||||||  ||| ||||||||| |||| | |||||||||||||||||||| ||||| ||||||||||  || |||||         |||||||    
T  18250769 cgagtcgagtcaaacttgtttgagctcgactcgactcgataagaattggttcggctcgaaacttgactcgagtttgaaacgaaccttttctctaactcga 18250670  T
Q  219 gttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||||||||||||||||||||||||||||| |||||    
T  18250669 gttcggctcgtttaaagttcacgaacagttcggttc 18250634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 110 - 245
Target Start/End: Complemental strand, 17026130 - 17025994
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa-cannnnn 208  Q
    |||||||||||||||||||| ||  ||||||||||||| |||| | |||||||||||||||||||| ||||||||||||||||  || |||| |          
T  17026130 gaaatgagtcgagtcgagtcgaacttgtctgagctcgactcgactcgataagaattggttcggctcgaaactcgactcgagtttgaaacgaatctttttt 17026031  T
Q  209 nnaaactcgagttcggctcgtttaaagttcacgaaca 245  Q
       ||||||||||||||||||||||||||| ||||||    
T  17026030 tttaactcgagttcggctcgtttaaagttcgcgaaca 17025994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 36926409 - 36926569
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||||||||||||||| || || |||||||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  36926409 tagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaa 36926508  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | |||||||||||||| |||||| ||||||||||||| | ||| |||||||    
T  36926509 ctattttttcatctcgagttcggctcatttaaaattcacgaacagttcgattcggctcgtt 36926569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 110 - 253
Target Start/End: Original strand, 26215725 - 26215868
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | || ||| |||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  |||||           
T  26215725 gaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactattttt 26215824  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggtt 253  Q
      ||||||||||||||||||||||||||||||||||||| ||||    
T  26215825 tcaactcgagttcggctcgtttaaagttcacgaacagttcggtt 26215868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 254
Target Start/End: Original strand, 42071520 - 42071672
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    |||||||  ||||||||||||||||  ||||  ||||||||||||  |||| |  ||||||||||||||||||| ||||||| ||||||||| |  ||||    
T  42071520 tagggctgaaaatgagtcgagtcgaaccaaacatgtctgagctcggctcgactcaataagaattggttcggctcgaaactcggctcgagttcgacacgaa 42071619  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |         | ||||||||||||||||||||||||||||||||||| |||||    
T  42071620 ctattttttcagctcgagttcggctcgtttaaagttcacgaacagttcggttc 42071672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 35544290 - 35544165
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||||||  |||||||||||||||||| | |||||||||||||||||||| |||||||| | |||||  || | ||||        |||| |||    
T  35544290 gagtcgagtcaaacatgtctgagctcgattcgactcgataagaattggttcggctcgaaactcgatttgagtttgaaacaaacatttctct-aacttgag 35544192  T
Q  220 ttcggctcgtttaaagttcacgaacag 246  Q
    |||||||||||||||||||||||||||    
T  35544191 ttcggctcgtttaaagttcacgaacag 35544165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 120 - 244
Target Start/End: Complemental strand, 33899727 - 33899603
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||||||||| ||||||| |||| | ||||||||||| |||||||| |||||||  ||| ||||||| |||||         | ||||||    
T  33899727 gagtcgagtcgaatctgtctcagctcgactcgactcgataagaattgattcggctcgaaactcggttcgggttcaaaacgaaccttttttctagctcgag 33899628  T
Q  220 ttcggctcgtttaaagttcacgaac 244  Q
    |||||||||||||||||||||||||    
T  33899627 ttcggctcgtttaaagttcacgaac 33899603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 7539791 - 7539633
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| |||||||| ||||| ||||| ||   |||||||||||  |||| | ||||||||||||||| |||| ||||||| ||||||||| |  ||||    
T  7539791 tagggctggaaatgagccgagttgagtcgaactcgtctgagctcggctcgactcgataagaattggttcagctcgaaactcggctcgagttcgactcgaa 7539692  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcg 260  Q
              | |||||||||||||||||||||||| |||||||||| |||||||||||    
T  7539691 tttttttttcagctcgagttcggctcgtttaaagtttacgaacagttcggttcagctcg 7539633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 262
Target Start/End: Complemental strand, 3931457 - 3931328
Alignment:
Q  134 ctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaac-annnnnnnaaactcgagttcggctcgttta 232  Q
    |||||||||||||  |||| | |||||||||||||||||||| ||||||| ||||||||| |  ||||| |        | ||||||||| |||||||||    
T  3931457 ctgtctgagctcggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgacacgaactatttttttcagctcgagttcagctcgttta 3931358  T
Q  233 aagttcacgaacagtttggttcagctcgtt 262  Q
    |||||||||||||||| ||||| |||||||    
T  3931357 aagttcacgaacagttcggttcggctcgtt 3931328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 97 - 262
Target Start/End: Complemental strand, 5776710 - 5776545
Alignment:
Q  97 cacattagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaa 196  Q
    |||||||||||| |||||||||||||||||  | || ||| |||||||||  |||| | |||||||||| |||| |||| ||||||| ||||||||| |     
T  5776710 cacattagggctggaaatgagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattagttcagctcgaaactcggctcgagttcgac 5776611  T
Q  197 gcgaacannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      ||||         | ||||||||||||||||||||| |||||||||| || ||||| |||||||    
T  5776610 aagaactattttttcagctcgagttcggctcgtttaaaattcacgaacaattcggttcggctcgtt 5776545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 28950333 - 28950285
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  28950333 ctcgagttcggctcgtttaaagttcacgaacagttcggttcagctcgtt 28950285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 110 - 262
Target Start/End: Original strand, 37333705 - 37333858
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaac-annnnn 208  Q
    |||||||||||||||||  | || ||| ||||||| |  |||| | |||||||||||||||||||| ||||||| ||||||||| |   |||| |         
T  37333705 gaaatgagtcgagtcgaaccgaacctgcctgagcttggctcgactcgataagaattggttcggctcgaaactcggctcgagttcgatatgaactattttt 37333804  T
Q  209 nnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
       | ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  37333805 ttcagctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 37333858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 262
Target Start/End: Complemental strand, 666348 - 666196
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | ||  ||||||||||||  | || | |||||||||||||||||||| ||||||| ||||||||| |  | |||           
T  666348 gaaatgagtcgagtcgaaccgaacatgtctgagctcggcttgactcgataagaattggttcggctcgaaactcggctcgagttcgacacaaactattttt 666249  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
      | ||| ||||||||||||||||||||||||||||||| ||||| |||||||    
T  666248 tcagctcaagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 666196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 7443837 - 7443920
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||||||||||  | ||||||||||||||||  |||| | ||||||||||||||||| || ||||||| |||||||||    
T  7443837 gaaatgagtcgagtcgaaccgaatctgtctgagctcggctcgactcgataagaattggttcggttcgaaactcggctcgagttc 7443920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 102 - 262
Target Start/End: Original strand, 43052282 - 43052442
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaa 201  Q
    ||||||| ||||| |||||||||||  | || ||| |||||||||  |||| | |||||||||||||||||||| ||||| | ||||||||| |  ||||    
T  43052282 tagggctggaaatcagtcgagtcgaaccgaacctgcctgagctcggctcgactcgataagaattggttcggctcgaaacttggctcgagttcgacacgaa 43052381  T
Q  202 cannnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |         | |||||||||||||| ||||||||||||||||||||  |||| |||||||    
T  43052382 ctattttttcagctcgagttcggctcatttaaagttcacgaacagttcagttcggctcgtt 43052442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 31490697 - 31490787
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    |||||||||||||||||||||||||||| ||    ||||||||| | || | ||||||||||||||||| |||||||| | ||||||||||    
T  31490697 tagggctagaaatgagtcgagtcgagtcgaactcatctgagctctactcaacttgataagaattggttcagctcaaaatttgactcgagtt 31490787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Complemental strand, 49035205 - 49035115
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||| |||||||||||| |||| |||||  ||||||||||||  |||| ||||||||| || | ||||||| ||||||||||||||||    
T  49035205 tagggctggaaatgagtcgaatcgaatcaaacatgtctgagctcggctcgacttgataagattttgctcggctcgaaactcgactcgagtt 49035115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 45054811 - 45054933
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||  |||||||||| |  |||| | |||||||||||||||||||  |||||||||||||||||||| |||||           ||||||    
T  45054811 gagtcgagtcgaacttgtctgagcttggctcgactcgataagaattggttcggcttgaaactcgactcgagttcaaaacgaacctttttttgggctcgag 45054910  T
Q  220 ttcggctcgtttaaagttcacga 242  Q
    |||||||||||||||||||||||    
T  45054911 ttcggctcgtttaaagttcacga 45054933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 388527 - 388575
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  388527 ctcgagttcggctcgtttaaagttcacgaacagttcggttcggctcgtt 388575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 3941791 - 3941834
Alignment:
Q  216 cgagttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  3941791 cgagttcggctcgtttaaagttcacgaacagtttggttcggctc 3941834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 20260070 - 20259979
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| | ||||||||||| ||| || |||  |||||||||||| |||| | ||||||||||||||| ||| |||||||| |||||||||    
T  20260070 tagggctggtaatgagtcgagccgactcgaattcgtctgagctcgactcgactcgataagaattggttcagcttaaaactcggctcgagttc 20259979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 102 - 152
Target Start/End: Complemental strand, 27232523 - 27232473
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcga 152  Q
    ||||||| ||||||||||||||||| || ||||||||||||||||||||||    
T  27232523 tagggctggaaatgagtcgagtcgaatcgaatctgtctgagctcgattcga 27232473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 26719159 - 26719227
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| || ||||||||||||||||| ||||||||||||||||| ||     ||||||||||||||||||||    
T  26719159 tagggctggacatgagtcgagtcgagtcgaatctgtctgagctcgactc-----gataagaattggttcggctc 26719227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 5795534 - 5795494
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  5795534 ctcgagttcggctcgtttaaagttcacgaacagttcggttc 5795494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 15433729 - 15433777
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    |||||||||||||||||||||||||| |||||||| ||||| |||||||    
T  15433729 ctcgagttcggctcgtttaaagttcatgaacagttcggttcggctcgtt 15433777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 262
Target Start/End: Complemental strand, 18740991 - 18740839
Alignment:
Q  105 ggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacan 204  Q
    |||| |||||||||||||||||||| || || ||| ||||||| |||||     |||||||| ||||| ||| |||||||||||||||  || | ||       
T  18740991 ggctggaaatgagtcgagtcgagtcgaacctctctaagctcgactcgat-----aagaattgattcggttcataactcgactcgagtttgaaacaaatct 18740897  T
Q  205 nnnnnnaaactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
          ||||||||||||| |||||||||||||||||||||  | ||||| |||||||    
T  18740896 ttttttaaactcgagttcgactcgtttaaagttcacgaacaactcggttcggctcgtt 18740839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Original strand, 22074566 - 22074652
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||| ||||||||| ||||||| ||||| || || |||||||| || |||||     ||||||||||||||||| |||||||||||||||||    
T  22074566 taggtctagaaatgggtcgagttgagtcgaacctatctgagctagactcgat-----aagaattggttcggctcgaaactcgactcgagttc 22074652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 33124198 - 33124248
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||||||||||  | |||||| ||||||    
T  33124198 aactcgagttcggctcgtttaaagttcacgaacaactcggttcaactcgtt 33124248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 388427 - 388500
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| |||||||||||||||||  | ||  || ||||||||| ||||| | ||||||||||||||||||||    
T  388427 tagggctggaaatgagtcgagtcgaaccgaacttgcctgagctcggttcgactcgataagaattggttcggctc 388500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 110 - 175
Target Start/End: Complemental strand, 5795626 - 5795561
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||||||||||||| || || ||| |||||||||  |||| | ||||||||||||||||||||    
T  5795626 gaaatgagtcgagtcgaatcgaacctgcctgagctcggctcgactcgataagaattggttcggctc 5795561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 15433629 - 15433702
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    ||||||| |||||||||||||||||  |||| ||| |||||||||  | || | ||||||||||||||||||||    
T  15433629 tagggctggaaatgagtcgagtcgaaccaaacctgcctgagctcggcttgactcgataagaattggttcggctc 15433702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 27232432 - 27232391
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||||||||||||||||||||| |||||||| ||||    
T  27232432 agttcggctcgtttaaagttcacgaacaatttggttcggctc 27232391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 120 - 193
Target Start/End: Original strand, 36471827 - 36471895
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||| || |||||||||||||| ||     ||||||||||| |||||||||||||||||||| |||||    
T  36471827 gagtcgagtcgaacctgtctgagctcgactc-----gataagaattgattcggctcaaaactcgactcaagttc 36471895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 37106263 - 37106304
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||||||| |||||||||||||||||||||||||| ||||    
T  37106263 agttcggctcatttaaagttcacgaacagtttggttcggctc 37106304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 175
Target Start/End: Complemental strand, 28950436 - 28950361
Alignment:
Q  99 cattagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||||| |||||||||||||||||  |||| ||| |||||||||  || | | ||||||||||||||||||||    
T  28950436 cattagggctggaaatgagtcgagtcgaaccaaa-ctgcctgagctcggctcaactcgataagaattggttcggctc 28950361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 244
Target Start/End: Original strand, 26719254 - 26719284
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaac 244  Q
    |||||||||||||||||||||||||||||||    
T  26719254 ctcgagttcggctcgtttaaagttcacgaac 26719284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 46574286 - 46574236
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||| ||||||  | ||||| |||||||    
T  46574286 aactcgagttcggctcgtttaaagttcgcgaacaactcggttcggctcgtt 46574236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 245
Target Start/End: Original strand, 10618131 - 10618164
Alignment:
Q  212 aactcgagttcggctcgtttaaagttcacgaaca 245  Q
    |||| |||||||||||||||||||||||||||||    
T  10618131 aacttgagttcggctcgtttaaagttcacgaaca 10618164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 17608140 - 17608181
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttca 255  Q
    ||||| ||||||||| ||||||||||||||||||||| ||||    
T  17608140 ctcgaattcggctcgcttaaagttcacgaacagtttgattca 17608181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 45174637 - 45174710
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||  ||||||||||||||||  | || |||||||||||||  |||| |  |||||||||||||||||||    
T  45174637 tagggctgaaaatgagtcgagtcgaaccgaacctgtctgagctcggctcgactcaataagaattggttcggctc 45174710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 46574360 - 46574319
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctga 141  Q
    ||||||||| |||||||||||||||||||| || ||||||||    
T  46574360 attagggctggaaatgagtcgagtcgagtcgaacctgtctga 46574319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 182
Target Start/End: Original strand, 30918930 - 30919010
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactc 182  Q
    ||||||| ||||||| |||||||||  | || || ||||||||||| || | | ||||||||||||||| |||| ||||||    
T  30918930 tagggctggaaatgaatcgagtcgaaccgaacctatctgagctcgactcaactcgataagaattggttcagctcgaaactc 30919010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 254
Target Start/End: Complemental strand, 37402060 - 37402024
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||||||| | ||||||||||||||||||||||||||    
T  37402060 agttcggcgcttttaaagttcacgaacagtttggttc 37402024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0444 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 120 - 262
Target Start/End: Complemental strand, 1530 - 1393
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| || |||||||||||||| ||     |||||||||||||||||||| ||||||||||||||||  || |||||         |||| |||    
T  1530 gagtcgagtcgaacctgtctgagctcgactc-----gataagaattggttcggctcgaaactcgactcgagtttgaaacgaaccttttctctaacttgag 1436  T
Q  220 ttcggctcgtttaaagttcacgaacagtttggttcagctcgtt 262  Q
    ||||||||||||||||||||||||||  ||||||| |||||||    
T  1435 ttcggctcgtttaaagttcacgaacaacttggttcggctcgtt 1393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 110 - 195
Target Start/End: Complemental strand, 5413 - 5333
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaa 195  Q
    |||||||||||||||||  ||||||||||||||||||||||     ||||||||||||||||| || ||| |||||||||||||||    
T  5413 gaaatgagtcgagtcgaaccaaatctgtctgagctcgattc-----gataagaattggttcggttcgaaagtcgactcgagttcaa 5333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 102 - 192
Target Start/End: Original strand, 13784210 - 13784295
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||| ||||||| |||||||||||| || |||||||||||||| ||     ||||| |||||||||||||||||||| ||||||||||    
T  13784210 tagggctggaaatgattcgagtcgagtcgaacctgtctgagctcgactc-----gataaaaattggttcggctcaaaacttgactcgagtt 13784295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 6025782 - 6025883
Alignment:
Q  1 aaatgaaggagaggttattctgttttctgctaactcttcaaatagctagtttgctttgtggagcaaaagggttttttctttcaactcaagacatttcaca 100  Q
    |||||||||  || ||||||| |||||||||||||||||||||||  |||||| |||||| ||||||  ||  ||||||||||||||| |  ||||||||    
T  6025782 aaatgaagggaagattattcttttttctgctaactcttcaaatagtgagtttggtttgtgtagcaaagaggccttttctttcaactcatggtatttcaca 6025881  T
Q  101 tt 102  Q
    ||    
T  6025882 tt 6025883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 242
Target Start/End: Original strand, 43966900 - 43967022
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||  ||||||| ||||  |||| | |||||||||||||||||||| |||||||||||||||||||| ||||            ||||||    
T  43966900 gagtcgagtcgaacttgtctgaactcggctcgactcgataagaattggttcggctcgaaactcgactcgagttcaaaacgaatttttttttgggctcgag 43966999  T
Q  220 ttcggctcgtttaaagttcacga 242  Q
    |||||||||||||||||||||||    
T  43967000 ttcggctcgtttaaagttcacga 43967022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 9413404 - 9413313
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||| |||||||||||||||||    ||  ||||||||||||| |||| | |||||||| ||||||||||| |||||||||| ||||||    
T  9413404 tagggctggaaatgagtcgagtcgaactgaacttgtctgagctcgactcgactcgataagaaatggttcggctcgaaactcgacttgagttc 9413313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 120 - 244
Target Start/End: Original strand, 39477436 - 39477559
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    |||||||||| ||||||||||||||||| |||| | ||||||||||||||||  || ||||| | ||||| ||| || ||||||        | ||||||    
T  39477436 gagtcgagtcgaatctgtctgagctcgactcgactcgataagaattggttcgattcgaaacttggctcgaattcgaaacgaacatttttct-agctcgag 39477534  T
Q  220 ttcggctcgtttaaagttcacgaac 244  Q
    ||||||| |||||||||||||||||    
T  39477535 ttcggcttgtttaaagttcacgaac 39477559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 22563276 - 22563410
Alignment:
Q  120 gagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgag 219  Q
    ||||||| || ||||||||||||||||  || | | ||||||| || | ||||||| |||||||||||||||||||  |||||         | ||||||    
T  22563276 gagtcgaatcgaatctgtctgagctcggctcaactcgataagattttgctcggctcgaaactcgactcgagttcaacacgaactcttttttcagctcgag 22563375  T
Q  220 ttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||| ||||||||| |||||||||||||| |||||    
T  22563376 ttcgactcgtttaaggttcacgaacagttcggttc 22563410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 11161190 - 11161237
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttcagctcgt 261  Q
    ||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  11161190 ctcgagttcagctcgtttaaagttcacgaacagttcggttcagttcgt 11161237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 245
Target Start/End: Original strand, 12377744 - 12377864
Alignment:
Q  125 gagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnnnaaactcgagttcgg 224  Q
    ||||| || |||||||| ||||| |||||| |||||||||  |||| |||| ||||||||||||||||| || |||||         |||||||||||      
T  12377744 gagtcgaacctgtctgaactcgactcgattcgataagaatgtgttcagctcgaaactcgactcgagttcgaaacgaactatttttttaactcgagttcat 12377843  T
Q  225 ctcgtttaaagttcacgaaca 245  Q
    |||||||||||||||| ||||    
T  12377844 ctcgtttaaagttcacaaaca 12377864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 172
Target Start/End: Original strand, 34515555 - 34515625
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcgg 172  Q
    ||||||| ||||||||||||||||| || || || ||||||||||||||||||   |||||||||| ||||    
T  34515555 tagggctggaaatgagtcgagtcgaatcgaacctatctgagctcgattcgattcattaagaattggctcgg 34515625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 453058 - 453090
Alignment:
Q  222 cggctcgtttaaagttcacgaacagtttggttc 254  Q
    |||||||||||||||||||||||||||||||||    
T  453058 cggctcgtttaaagttcacgaacagtttggttc 453090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 110 - 243
Target Start/End: Complemental strand, 25731981 - 25731853
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaacannnnnn 209  Q
    |||||||||||||||||  | ||| ||||||||||||| ||     |||||||||||||||||||| ||| ||||||| ||||| | || |||           
T  25731981 gaaatgagtcgagtcgaaccgaatttgtctgagctcgactc-----gataagaattggttcggctcgaaagtcgactcaagttcgatgcaaacccttttt 25731887  T
Q  210 naaactcgagttcggctcgtttaaagttcacgaa 243  Q
      |||| ||||||||||| |||||||||||||||    
T  25731886 ttaacttgagttcggctcatttaaagttcacgaa 25731853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 110 - 193
Target Start/End: Complemental strand, 22930976 - 22930898
Alignment:
Q  110 gaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||||||||||||  | || |||||||| ||||| ||     |||||||||||||||||||| ||||||| |||||||||    
T  22930976 gaaatgagtcgagtcgaaccgaacctgtctgaactcgactc-----gataagaattggttcggctcgaaactcggctcgagttc 22930898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 193
Target Start/End: Complemental strand, 17865760 - 17865723
Alignment:
Q  156 gataagaattggttcggctcaaaactcgactcgagttc 193  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  17865760 gataagaattggttcagctcgaaactcgactcgagttc 17865723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 259
Target Start/End: Original strand, 23180865 - 23180906
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    |||||| ||||||||||||| |||||||||||||||| ||||    
T  23180865 agttcgactcgtttaaagtttacgaacagtttggttcggctc 23180906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 195
Target Start/End: Original strand, 32740279 - 32740372
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaa 195  Q
    |||||||  ||||||||||| ||||||| ||| | |||||| ||||||||| |  ||||||||| |||| |||| ||| || |||||| |||||    
T  32740279 tagggctgaaaatgagtcgaatcgagtcgaatttatctgagttcgattcgactcaataagaattagttcagctcgaaattcaactcgaattcaa 32740372  T

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Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 254
Target Start/End: Complemental strand, 10750300 - 10750260
Alignment:
Q  214 ctcgagttcggctcgtttaaagttcacgaacagtttggttc 254  Q
    ||||||| |||||| ||||||||||||||| ||||||||||    
T  10750300 ctcgagtacggctcttttaaagttcacgaatagtttggttc 10750260  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 27189693 - 27189629
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattg 166  Q
    ||||||| ||||||||||||||||| || ||  ||||||||||||| |||| | | |||||||||    
T  27189693 tagggctggaaatgagtcgagtcgaatcgaacttgtctgagctcgactcgactcgttaagaattg 27189629  T

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Target: scaffold0106 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 104 - 202
Target Start/End: Original strand, 26495 - 26593
Alignment:
Q  104 gggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttcaaagcgaac 202  Q
    ||||| ||||| |||||||| || || || |||| ||||||||| |||| | ||||||||||||||| |||| ||| ||||||||||||| || |||||    
T  26495 gggctggaaatcagtcgagttgaatcgaacctgtttgagctcgactcgactcgataagaattggttcagctcgaaattcgactcgagttcgaaacgaac 26593  T

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Target: scaffold0043 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 100 - 192
Target Start/End: Original strand, 16490 - 16582
Alignment:
Q  100 attagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagtt 192  Q
    ||||||||| ||||||||||||||||| || || |||||||||||||| || | |  | || |||  ||||||||| ||||||||||||||||    
T  16490 attagggctggaaatgagtcgagtcgaatcgaacctgtctgagctcgactcaactcaacaaaaatatgttcggctcgaaactcgactcgagtt 16582  T

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Target: scaffold0658 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0658
Description:

Target: scaffold0658; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 193
Target Start/End: Complemental strand, 6533 - 6442
Alignment:
Q  102 tagggctagaaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctcaaaactcgactcgagttc 193  Q
    |||||||  |||||||||||||||| |  || ||| |||||||||| |||| | ||||||||||||||||| |  ||||||| |||||||||    
T  6533 tagggctgaaaatgagtcgagtcgaattgaacctgcctgagctcgactcgactcgataagaattggttcgggttgaaactcggctcgagttc 6442  T

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Target: scaffold0224 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0224
Description:

Target: scaffold0224; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 7984 - 7943
Alignment:
Q  218 agttcggctcgtttaaagttcacgaacagtttggttcagctc 259  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  7984 agttcggctcgcttaaagttcacgaacagtttggttcggctc 7943  T

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Target: scaffold0484 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 10541 - 10495
Alignment:
Q  426 catgcccccacgcacccttgtcctttgtatctttgatcctgtggtct 472  Q
    ||||| |||| |||||||||||||||| |||||||||| ||||||||    
T  10541 catgcacccatgcacccttgtcctttgaatctttgatcttgtggtct 10495  T

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Target: scaffold0135 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 33559 - 33495
Alignment:
Q  111 aaatgagtcgagtcgagtcaaatctgtctgagctcgattcgatttgataagaattggttcggctc 175  Q
    |||||||||||||| | || || |||||||||||||| || | |  |||||||||||||||||||    
T  33559 aaatgagtcgagtcaaatcgaaactgtctgagctcgactcaactcaataagaattggttcggctc 33495  T

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