View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_high_8 (Length: 426)
Name: NF3013_high_8
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 33383661 - 33384006
Alignment:
| Q |
19 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383661 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33383759 |
T |
|
| Q |
119 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383760 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33383859 |
T |
|
| Q |
219 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
318 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
33383860 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacat |
33383959 |
T |
|
| Q |
319 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33383960 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
33384006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 33384792 - 33385137
Alignment:
| Q |
19 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
118 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384792 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33384890 |
T |
|
| Q |
119 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384891 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33384990 |
T |
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| Q |
219 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
318 |
Q |
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| T |
33384991 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccgcacat |
33385090 |
T |
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| Q |
319 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
365 |
Q |
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| T |
33385091 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
33385137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 19 - 365
Target Start/End: Original strand, 33384228 - 33384573
Alignment:
| Q |
19 |
cataacaagggaaccttttaaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
118 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384228 |
cataacaagggaaccttt-aaggatccaaaatgtaaatcgacaaccaccttcaagaaatgacactaggtcacaattcacttgctatatatagttgtggga |
33384326 |
T |
|
| Q |
119 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384327 |
aacaagatcatatatactccgcaagccaccttgagtgactagtaattaattactaggattactaagatcaactatgttggtggatcaaattgttagtgga |
33384426 |
T |
|
| Q |
219 |
tcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaagtgttgtcgggacatccgcacat |
318 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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| T |
33384427 |
tcgacactggtgcctcacaccatatttgttatgatcatgctatgtttaaaacatacaaaggtgctcaagatatgaaaatgttgttgggacatccacacat |
33384526 |
T |
|
| Q |
319 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33384527 |
cattaaagttgttggaattagagacgtggagttgcaattcacatccc |
33384573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 349
Target Start/End: Original strand, 33090583 - 33090747
Alignment:
| Q |
185 |
atcaactatgttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacatacaaaggtgctc |
284 |
Q |
| |
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||||||| ||||||||||| || | | |||||| |||||||| ||||| | ||||||||||| ||| | |||||||||||| ||||||| |||| |
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| T |
33090583 |
atcaacttagttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttttgaccgtgctatgtttaagacatacactactgctg |
33090682 |
T |
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| Q |
285 |
aagatatgaaagtgttgtcgggacatccgcacatcattaaagttgttggaattagagacgtggag |
349 |
Q |
| |
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| ||| |||||||||| |||| || | |||| || |||||||| ||||||| |||| |||||| |
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| T |
33090683 |
atgatcagaaagtgttgctgggagattctcacaccactaaagttgctggaattggagaagtggag |
33090747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 275
Target Start/End: Original strand, 13583922 - 13584003
Alignment:
| Q |
194 |
gttggtggatcaaattgttagtggatcgacactggtgcctcacaccatgtttgttatgatcatgctatgtttaaaacataca |
275 |
Q |
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||||||||||| || | | |||||| |||||||| ||||| | ||||||||||||||| | ||||||||| || ||||||| |
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| T |
13583922 |
gttggtggatctgatggatggtggatagacactggcgcctctcgccatgtttgttatgaccgtgctatgttcaagacataca |
13584003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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