View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3013_low_1 (Length: 640)
Name: NF3013_low_1
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3013_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 624
Target Start/End: Complemental strand, 25206988 - 25206363
Alignment:
| Q |
1 |
taccaagtgcaccgatatttgcagcaccaatagcagaggtgatgtgatcgtaaccaggggcaatatcggttgttaaaggaccaagagtgtagaaaggtgc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25206988 |
taccaagtgcaccgatatttgcagcaccaatagcagaggtgatgtgatcgtaaccaggggcaatatcggttgttaaaggaccaagagtgtagaaaggtgc |
25206889 |
T |
|
| Q |
101 |
ttcattacaccattctagctgttttttcatgttttcaggaatcttgtgcattggaacatgtcctggtccttcattcatcacctgcaaagcaactcaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25206888 |
ttcattacaccattctagctgttttttcatgttttcaggaatcttgtgcattggaacatgtcctggtccttcattcatcacctgcaaagcaactcaaagt |
25206789 |
T |
|
| Q |
201 |
atactaaaagcactcatggtttcgagaaatacattgacggtagaaagcactcatagtataatctatactgtcggtagaaaacacatcagctaatgatagt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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|
| T |
25206788 |
atactaaaagcactcatggtttcgagaaatatattgatggtagaaagcactcatagtataatctatattgtcggtagaaaacgcatcagctaatgatagt |
25206689 |
T |
|
| Q |
301 |
ctaatctattgacggtagcccttttctcttccaaaatcacccttcatcaaactattttatttaaat--aaacacacaattttgtaacctctattatgttt |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| | |||||||||||||||||||||||| |
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|
| T |
25206688 |
ctaatctattgacggtagcccttttctcttccaaaatcacccttcattaaactattttatttaaataaaaacataaaattttgtaacctctattatgttt |
25206589 |
T |
|
| Q |
399 |
atcaagaaaagcatacaaaaggatgagtcagtagccgtgtagtataaaatatattaggtcagcgtatgacaaaaaattgttaaaagcacggtgtactagt |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25206588 |
atcaagaaaagcatacaaaaggatgagtcagtagccgtgtagtataaaatatattaggtcagcgtatgataaaaaattgttaaaagcacggtgtactagt |
25206489 |
T |
|
| Q |
499 |
taagtttaacaaagcagactaggaatttcattggccgtcgtagcagtggtgaattcagcagaagttacccatacaaataatacattgtaaggtcaacatc |
598 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25206488 |
taagtttgacaaagcagactaggaatttcattggccgacgtagcagtggtgaattcagcagaagttacccatacaaataatacattgtaaggtcaacatc |
25206389 |
T |
|
| Q |
599 |
aaaattgaaattgaggcgaaattatt |
624 |
Q |
| |
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|||||||||||||||||||||||||| |
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|
| T |
25206388 |
aaaattgaaattgaggcgaaattatt |
25206363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 25195704 - 25195462
Alignment:
| Q |
1 |
taccaagtgcaccgatatttgcagcaccaatagcagaggtgatgtgatcgtaaccaggggcaatatcggttgttaaaggaccaagagtgtagaaaggtgc |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
25195704 |
taccaagtgcgccgatatttgcagcaccaatagcagaggtgatgtgatcgtaaccaggggcaatatcggttgttaaaggaccaagagtgtagaaaggtgc |
25195605 |
T |
|
| Q |
101 |
ttcattacaccattctagctgttttttcatgttttcaggaatcttgtgcattggaacatgtcctggtccttcattcatcacctgcaaagcaactcaaagt |
200 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | | || |||||||| |
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|
| T |
25195604 |
ttcattacaccattctagctgtttttgcatgttttcaggaatcttgtgcattggaacatgtccaggtccttcattcatcacctgtagatcagctcaaagt |
25195505 |
T |
|
| Q |
201 |
atactaaaagcactcatggtttcgagaaatacattgacggtag |
243 |
Q |
| |
|
| || ||||| | ||||||| || ||||||| ||| ||||||| |
|
|
| T |
25195504 |
aaacaaaaagaaatcatggtctccagaaatatatttacggtag |
25195462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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