View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_low_10 (Length: 412)

Name: NF3013_low_10
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_low_10
NF3013_low_10
[»] chr3 (7 HSPs)
chr3 (1-136)||(2832938-2833073)
chr3 (254-400)||(2833189-2833336)
chr3 (270-412)||(4778074-4778211)
chr3 (258-412)||(41640866-41641018)
chr3 (335-412)||(1045348-1045424)
chr3 (337-404)||(24748338-24748405)
chr3 (335-379)||(36597090-36597134)
[»] chr1 (7 HSPs)
chr1 (258-411)||(51871246-51871396)
chr1 (335-412)||(15274389-15274466)
chr1 (359-412)||(25410572-25410625)
chr1 (351-412)||(52372712-52372773)
chr1 (359-410)||(3227649-3227700)
chr1 (258-315)||(3227552-3227609)
chr1 (335-412)||(40799693-40799770)
[»] chr8 (4 HSPs)
chr8 (258-412)||(2074704-2074855)
chr8 (258-315)||(26000235-26000291)
chr8 (351-412)||(42032775-42032836)
chr8 (357-412)||(32073929-32073984)
[»] chr2 (2 HSPs)
chr2 (335-412)||(10994474-10994551)
chr2 (327-412)||(43411556-43411641)
[»] chr7 (4 HSPs)
chr7 (335-412)||(33743514-33743591)
chr7 (351-412)||(33888658-33888719)
chr7 (364-412)||(12258417-12258465)
chr7 (335-391)||(26556449-26556505)
[»] chr6 (1 HSPs)
chr6 (352-412)||(9755657-9755717)
[»] chr5 (2 HSPs)
chr5 (357-412)||(33861963-33862018)
chr5 (358-412)||(33672897-33672946)
[»] scaffold0329 (1 HSPs)
scaffold0329 (351-412)||(18417-18478)
[»] chr4 (2 HSPs)
chr4 (351-412)||(50655066-50655127)
chr4 (372-412)||(48309635-48309675)


Alignment Details
Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 2832938 - 2833073
Alignment:
Q  1 ttgtatggcaaaataaatatatataattacaaaagaaaatgatgtacaatacaccatatagccgtcaaaacgacactccaacaaaccaccacctaggata 100  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2832938 ttgtatggcaaaataaatatataaaaatacaaaagaaaatgatgtacaatacaccatatagccgtcaaaacgacactccaacaaaccaccacctaggata 2833037  T
Q  101 acgccccaaccccacagacggggtcggaggtgcacc 136  Q
    ||||||||| ||||||||| |||||||||| |||||    
T  2833038 acgccccaatcccacagacagggtcggaggcgcacc 2833073  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 254 - 400
Target Start/End: Original strand, 2833189 - 2833336
Alignment:
Q  254 tgggagccacaccgggaaggtaggggagatacaaccccaccaaaccccacaagcaaccccagaagnnnnnnn-cccaccgcaaaaaccctactgatttca 352  Q
    ||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||        |||||||||||||||||||||||| ||    
T  2833189 tgggagccacaccggaaaggtaggggagatacaaccgcaccgaaccccacaagcaaccccagaagaaaaaaaacccaccgcaaaaaccctactgattcca 2833288  T
Q  353 acataggacgggctgcacctcccactcatagagagagcaggaactagc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833289 acataggacgggctgcacctcccactcatagagagagcaggaactagc 2833336  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 270 - 412
Target Start/End: Complemental strand, 4778211 - 4778074
Alignment:
Q  270 aaggtaggggagatacaaccccaccaaaccccacaagcaaccccag--aagnnnnnnncccaccgcaaaaaccctactgatttcaacataggacgggctg 367  Q
    |||| |||||||||||||||||||||||||| ||| ||||||||||  |||        |||||  ||||||||||| ||||  |||| |||||||||||    
T  4778211 aaggaaggggagatacaaccccaccaaacccaacaggcaaccccaggcaagcaa-----ccacc--aaaaaccctaccgattcaaacacaggacgggctg 4778119  T
Q  368 cacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||    
T  4778118 cacctcccactcatagagagagcagggactagcagggcacctagc 4778074  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 258 - 412
Target Start/End: Complemental strand, 41641018 - 41640866
Alignment:
Q  258 agccacaccgggaaggtaggggagatacaaccccaccaaaccccacaagcaaccccagaagnnnnnnncccaccgcaaaaaccctactgatttcaacata 357  Q
    |||| |||| ||||||  ||||||||||||||||||  |||||| ||||||||||||| |         ||||| | |||||||||||| |   |||| |    
T  41641018 agccgcaccaggaagggtggggagatacaaccccactgaaccccgcaagcaaccccagca-aaaccaaaccaccac-aaaaccctactggtccaaacaca 41640921  T
Q  358 ggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41640920 ggacgggctgcacctcccactcatagggagagcaggaactagcagggcacttagc 41640866  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 335 - 412
Target Start/End: Original strand, 1045348 - 1045424
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||| ||||  |||| |||||| |||||||||||| |||||||||||| || ||||||||||||||||||||    
T  1045348 aaaaccctaccgattcaaacacaggacgagctgcacctccc-ctcatagagagaacaagaactagcagggcacttagc 1045424  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 24748338 - 24748405
Alignment:
Q  337 aaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcaggg 404  Q
    ||||||| ||||| |||||  |||||| |||||||||||||||| ||||||| || ||||||||||||    
T  24748338 aaccctattgattccaacactggacggactgcacctcccactcaaagagagaacatgaactagcaggg 24748405  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 379
Target Start/End: Complemental strand, 36597134 - 36597090
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactc 379  Q
    ||||||||||||||| ||||| ||||||||||||||||| |||||    
T  36597134 aaaaccctactgattccaacacaggacgggctgcacctctcactc 36597090  T

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Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 258 - 411
Target Start/End: Complemental strand, 51871396 - 51871246
Alignment:
Q  258 agccacaccgggaaggtaggggagatacaaccccaccaaaccccacaagcaaccccagaagnnnnnnncccaccg-ca-aaaaccctactgatttcaaca 355  Q
    ||||||||  |||||| |||||||||||||||||||| |||||| |||||| |||||| |        ||||||  || |||||||||| ||||  ||||    
T  51871396 agccacactaggaaggaaggggagatacaaccccacccaaccccgcaagcagccccagga-----acacccaccatcacaaaaccctaccgattcaaaca 51871302  T
Q  356 taggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttag 411  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  51871301 caggacgggctgcacctcccactcatagagagaacaggaactagcagggcacttag 51871246  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 15274466 - 15274389
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||| |||| ||||| ||||| | |||||||||||||||||||||||| || ||||||||||| ||||||||    
T  15274466 aaaaccctaccgattccaacacaggacagactgcacctcccactcatagagagaacatgaactagcaggacacttagc 15274389  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 25410572 - 25410625
Alignment:
Q  359 gacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||||||||||||||||||| |||||||||||||||| || |||||||    
T  25410572 gacgggctgcacctcccactcatagaaagagcaggaactagcaaggtacttagc 25410625  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 52372773 - 52372712
Alignment:
Q  351 caacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||| |||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||||    
T  52372773 caacaaaggatgggttgcacctcccactcataaaaagagcaggaactagcagggcacctagc 52372712  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 359 - 410
Target Start/End: Original strand, 3227649 - 3227700
Alignment:
Q  359 gacgggctgcacctcccactcatagagagagcaggaactagcagggcactta 410  Q
    |||||| ||||| ||||||||||||||||| |||  ||||||||||||||||    
T  3227649 gacgggttgcacttcccactcatagagagaacagagactagcagggcactta 3227700  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 3227552 - 3227609
Alignment:
Q  258 agccacaccgggaaggtaggggagatacaaccccaccaaaccccacaagcaaccccag 315  Q
    ||||||||  |||||| ||||||||||| |||||||| |||||| |||||| ||||||    
T  3227552 agccacactaggaaggaaggggagatacgaccccacccaaccccgcaagcagccccag 3227609  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 40799770 - 40799693
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||| |||  || || |||||| ||||||||||||||||||  | |||||| |||||||||  |||||||||    
T  40799770 aaaaccctaccgatgccagcaaaggacgagctgcacctcccactcatgaaaagagcaagaactagcaatgcacttagc 40799693  T

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Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 258 - 412
Target Start/End: Original strand, 2074704 - 2074855
Alignment:
Q  258 agccacaccgggaaggtaggggagatacaaccccaccaaaccccacaagcaaccccagaagnnnnnnncccaccgcaaaaaccctactgatttcaacata 357  Q
    |||||||||||||||| ||||||||||||||| || | ||||||||| ||| ||||||  |        |||| |||||| |||||| |||   |||| |    
T  2074704 agccacaccgggaaggaaggggagatacaaccgcatccaaccccacaggcagccccag--gaacaccaaccactgcaaaa-ccctaccgatacaaacaca 2074800  T
Q  358 ggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  2074801 ggacgggttgcacctcccactcatagagagaacaggaactagcagggcacttagc 2074855  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 26000291 - 26000235
Alignment:
Q  258 agccacaccgggaaggtaggggagatacaaccccaccaaaccccacaagcaaccccag 315  Q
    |||||||||||||||| ||||  |||||||||||||| ||||||||||||||||||||    
T  26000291 agccacaccgggaaggaagggt-gatacaaccccacccaaccccacaagcaaccccag 26000235  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 42032836 - 42032775
Alignment:
Q  351 caacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||| |||||||| ||||||||||||||||| |  ||||||||| ||||||||||||||||    
T  42032836 caacaaaggacgggttgcacctcccactcataaaaggagcaggaagtagcagggcacttagc 42032775  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 412
Target Start/End: Original strand, 32073929 - 32073984
Alignment:
Q  357 aggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||||| ||||||||||||| |  ||||||||||||| ||| ||||||||    
T  32073929 aggacgggctgcgcctcccactcataaaaggagcaggaactagtaggacacttagc 32073984  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 10994551 - 10994474
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||| ||||  |||| | |||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  10994551 aaaaccctaccgattcaaacacaagacgggctgcacctcccactcatagagagaacgggaactagcagggcacttagc 10994474  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 327 - 412
Target Start/End: Complemental strand, 43411641 - 43411556
Alignment:
Q  327 ccaccgcaaaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||| ||||||||||||   | |||||| |||||||||||||||||||||||||    || |||||| |||||||| ||||||||    
T  43411641 ccaccacaaaaaccctaccactgtcaacaaaggacgggctgcacctcccactcatgataagtgcaggagctagcaggacacttagc 43411556  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 335 - 412
Target Start/End: Complemental strand, 33743591 - 33743514
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||| || |  |||| |||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||    
T  33743591 aaaaccctaccgactcaaacacaggacgggttgcacctcccactcatagagagaacagggactagcagggcacttagc 33743514  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Complemental strand, 33888719 - 33888658
Alignment:
Q  351 caacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||||||| ||||||| |||||||||||||||  | ||||||||||||||||||||    
T  33888719 caacataggacgggttgcaccttccactcatagagagaatatgaactagcagggcacttagc 33888658  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 412
Target Start/End: Complemental strand, 12258465 - 12258417
Alignment:
Q  364 gctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||||||||||||||||||||||| ||| ||||| ||||||||    
T  12258465 gctgcacctcccactcatagagagagcagggactggcaggacacttagc 12258417  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 26556449 - 26556505
Alignment:
Q  335 aaaaccctactgatttcaacataggacgggctgcacctcccactcatagagagagca 391  Q
    |||||||||||||||  | || |||| |||||||||||||||||||||||| |||||    
T  26556449 aaaaccctactgattcaagcacaggatgggctgcacctcccactcatagagggagca 26556505  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 352 - 412
Target Start/End: Original strand, 9755657 - 9755717
Alignment:
Q  352 aacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||| ||||||||||||||||| || |||| |||||| || ||||||||||||||||||||    
T  9755657 aacacaggacgggctgcacctctcattcatggagagaacatgaactagcagggcacttagc 9755717  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 357 - 412
Target Start/End: Complemental strand, 33862018 - 33861963
Alignment:
Q  357 aggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    |||||||||| ||||||||||||||  | ||||||||||||| |||||||||||||    
T  33862018 aggacgggctacacctcccactcatgaaaagagcaggaactaccagggcacttagc 33861963  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 412
Target Start/End: Complemental strand, 33672946 - 33672897
Alignment:
Q  358 ggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||||| ||||||||||||||||||||     ||||||||||||||||||||||    
T  33672946 ggacgggttgcacctcccactcatagag-----aggaactagcagggcacttagc 33672897  T

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Target: scaffold0329 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 18417 - 18478
Alignment:
Q  351 caacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||| || ||||| ||||||||||||||||    || ||||||||||||||||||||||||    
T  18417 caacacagaacgggttgcacctcccactcatgataagtgcaggaactagcagggcacttagc 18478  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 50655066 - 50655127
Alignment:
Q  351 caacataggacgggctgcacctcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||| ||||| || |||||||||||||||| || | |||| ||||||||||| ||||||||    
T  50655066 caacaaaggacaggttgcacctcccactcatggaaaaagcaagaactagcaggacacttagc 50655127  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 412
Target Start/End: Original strand, 48309635 - 48309675
Alignment:
Q  372 tcccactcatagagagagcaggaactagcagggcacttagc 412  Q
    ||||||||||||||||| ||||||||||||||  |||||||    
T  48309635 tcccactcatagagagaacaggaactagcaggaaacttagc 48309675  T

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