View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_low_11 (Length: 407)

Name: NF3013_low_11
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_low_11
NF3013_low_11
[»] chr5 (2 HSPs)
chr5 (203-394)||(34822025-34822217)
chr5 (14-145)||(34821856-34821987)
[»] chr6 (1 HSPs)
chr6 (224-295)||(21917346-21917418)
[»] chr7 (2 HSPs)
chr7 (224-295)||(43119210-43119282)
chr7 (224-283)||(49013055-49013115)
[»] chr3 (1 HSPs)
chr3 (227-294)||(18391942-18392010)
[»] chr8 (2 HSPs)
chr8 (228-297)||(25105729-25105799)
chr8 (230-293)||(31678630-31678694)
[»] chr2 (5 HSPs)
chr2 (224-303)||(8442608-8442688)
chr2 (224-289)||(26674105-26674171)
chr2 (224-261)||(37940464-37940501)
chr2 (230-295)||(38621927-38621993)
chr2 (224-292)||(3960865-3960934)
[»] chr1 (1 HSPs)
chr1 (227-296)||(27580763-27580833)
[»] chr4 (2 HSPs)
chr4 (224-294)||(8019977-8020048)
chr4 (240-292)||(8019430-8019483)


Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 203 - 394
Target Start/End: Original strand, 34822025 - 34822217
Alignment:
Q  203 ctctttgtaaaaaataaataaatcatgtatttactacaaaactatagtaatagaaattgcatttattttaggaaatggagagaatctcaactcattgtta 302  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  34822025 ctctttgtaaaaaataaataaaccatgtatttactacaaaactatagtaatagaaattgcatttattttaggaaatggagagaatttcaactcattgtta 34822124  T
Q  303 agagtttaaatttt-ttgttatttattaaaaagaaaataaatttaaatggcatagtaaactatttatcttatcctttttccatgatcataact 394  Q
    |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  34822125 agagtttaaattttgtttttatttattaaaaagaaaataaatttaaatggcatagtaaactatttatcttatcctttttccattatcataact 34822217  T

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Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 14 - 145
Target Start/End: Original strand, 34821856 - 34821987
Alignment:
Q  14 atatcttggtcgatatcaaatatcaaaagctttagaaatgacaaaattgttgatgggttaggcatgttgctaaggagtaaagatcctctccattatctaa 113  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  34821856 atatcttggtcgatatcaaatatcgaaagctttagaaatgacaaaattgttgatgggttaagcatgttgctaaggagtaaagatcctctccattttctaa 34821955  T
Q  114 aataaatgaaaattttcattagtatagttttg 145  Q
    ||||||||| ||||||||||||||||||||||    
T  34821956 aataaatgacaattttcattagtatagttttg 34821987  T

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Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 21917418 - 21917346
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattgc-atttattttaggaaatggagagaatctcaactc 295  Q
    |||||||||||||||||||||||||||||| |||| ||| |||||||||| ||||||||||  ||||||||||    
T  21917418 atcatgtatttactacaaaactatagtaatggaaactgcaatttattttaagaaatggagaatatctcaactc 21917346  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 224 - 295
Target Start/End: Complemental strand, 43119282 - 43119210
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattg-catttattttaggaaatggagagaatctcaactc 295  Q
    ||||||||||||||||||||||||||||||  |  ||| |||||||||||  |||||||||||||||||||||    
T  43119282 atcatgtatttactacaaaactatagtaatgaatgttgccatttattttaaaaaatggagagaatctcaactc 43119210  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 283
Target Start/End: Original strand, 49013055 - 49013115
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattg-catttattttaggaaatggaga 283  Q
    ||||||||||||||||| |||||||||||  || ||||  ||||||| |||||||||||||    
T  49013055 atcatgtatttactacataactatagtaacggacattgttatttattgtaggaaatggaga 49013115  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 294
Target Start/End: Original strand, 18391942 - 18392010
Alignment:
Q  227 atgtatttactacaaaactatagtaatagaaattgc-atttattttaggaaatggagagaatctcaact 294  Q
    ||||||||||||||||||||||||||| |   |||| ||||||| ||||||||||||||||||||||||    
T  18391942 atgtatttactacaaaactatagtaatgggttttgccatttattataggaaatggagagaatctcaact 18392010  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 228 - 297
Target Start/End: Original strand, 25105729 - 25105799
Alignment:
Q  228 tgtatttactacaaaactatagtaatagaaattgc-atttattttaggaaatggagagaatctcaactcat 297  Q
    |||||||||||||||||||||||||| ||  || | ||||||||||| ||||||||| |||||||||||||    
T  25105729 tgtatttactacaaaactatagtaatggatgttaccatttattttagaaaatggagataatctcaactcat 25105799  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 31678694 - 31678630
Alignment:
Q  230 tatttactacaaaactatagtaatagaaat-tgcatttattttaggaaatggagagaatctcaac 293  Q
    |||||||| ||||||||||||||| || || | ||||||||||| ||||||||||| ||| ||||    
T  31678694 tatttacttcaaaactatagtaatggagatgtccatttattttaagaaatggagaggatcccaac 31678630  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 224 - 303
Target Start/End: Complemental strand, 8442688 - 8442608
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattg-catttattttaggaaatggagagaatctcaactcattgttaa 303  Q
    |||||||||||||||||||| |||||||||  |||||| ||||||||  | ||||| |||||||||| |||||||| ||||    
T  8442688 atcatgtatttactacaaaattatagtaatgaaaattgccatttattcaaagaaattgagagaatctgaactcatttttaa 8442608  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 26674171 - 26674105
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattg-catttattttaggaaatggagagaatct 289  Q
    |||||||||||||| |||||| |||||||| || | |  ||||||||||||||||||||||||||||    
T  26674171 atcatgtatttactccaaaacgatagtaatggacactatcatttattttaggaaatggagagaatct 26674105  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 261
Target Start/End: Original strand, 37940464 - 37940501
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattg 261  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  37940464 atcatgtatttactacaaaactatagtaatagacattg 37940501  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 295
Target Start/End: Original strand, 38621927 - 38621993
Alignment:
Q  230 tatttactacaaaactatagtaatagaaattg-catttattttaggaaatggagagaatctcaactc 295  Q
    |||||||  ||||||||||||||  ||||||| |||||||| ||| |||||||||| ||||||||||    
T  38621927 tatttacagcaaaactatagtaaaggaaattgacatttattatagcaaatggagaggatctcaactc 38621993  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 292
Target Start/End: Original strand, 3960865 - 3960934
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaatt-gcatttattttaggaaatggagagaatctcaa 292  Q
    ||||||||||||| |||||||||||||||| || |||  |||||||  ||| |||||||||| |||||||    
T  3960865 atcatgtatttaccacaaaactatagtaatggacattatcatttatcgtagaaaatggagaggatctcaa 3960934  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 296
Target Start/End: Original strand, 27580763 - 27580833
Alignment:
Q  227 atgtatttactacaaaactatagtaatagaaattg-catttattttaggaaatggagagaatctcaactca 296  Q
    ||||||||| ||||||| |||||||||||| |||| |||||||||||| ||||  |||| |||||||||||    
T  27580763 atgtatttattacaaaattatagtaatagacattgtcatttattttagaaaataaagaggatctcaactca 27580833  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 224 - 294
Target Start/End: Original strand, 8019977 - 8020048
Alignment:
Q  224 atcatgtatttactacaaaactatagtaatagaaattg-catttattttaggaaatggagagaatctcaact 294  Q
    |||||||||||||  |||||||||||||||  | |||| |||||||||||| |||| ||||| |||||||||    
T  8019977 atcatgtatttacatcaaaactatagtaatgaacattgccatttattttagaaaattgagaggatctcaact 8020048  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 292
Target Start/End: Complemental strand, 8019483 - 8019430
Alignment:
Q  240 aaaactatagtaatagaaattgc-atttattttaggaaatggagagaatctcaa 292  Q
    |||||||||||||| || ||||| ||||||| |||||||||||||| |||||||    
T  8019483 aaaactatagtaatggatattgctatttattataggaaatggagaggatctcaa 8019430  T

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