View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3013_low_13 (Length: 396)

Name: NF3013_low_13
Description: NF3013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3013_low_13
NF3013_low_13
[»] chr7 (7 HSPs)
chr7 (17-278)||(30120207-30120468)
chr7 (108-364)||(30131121-30131380)
chr7 (258-384)||(30165608-30165734)
chr7 (212-364)||(30125167-30125319)
chr7 (132-239)||(28180514-28180624)
chr7 (17-176)||(30123949-30124109)
chr7 (332-384)||(28181028-28181080)
[»] chr8 (2 HSPs)
chr8 (194-384)||(43164871-43165061)
chr8 (194-384)||(41311193-41311383)
[»] chr5 (1 HSPs)
chr5 (17-239)||(29261168-29261390)
[»] chr2 (2 HSPs)
chr2 (137-278)||(21430104-21430244)
chr2 (112-364)||(21426387-21426635)
[»] scaffold1051 (1 HSPs)
scaffold1051 (124-277)||(1971-2121)
[»] chr4 (1 HSPs)
chr4 (17-50)||(48852581-48852614)


Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 17 - 278
Target Start/End: Complemental strand, 30120468 - 30120207
Alignment:
Q  17 gaatccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30120468 gaatccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcaatattttaaggtttttgtat 30120369  T
Q  117 ggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttgg 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  30120368 ggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctggtttgattaccttgg 30120269  T
Q  217 agattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttat 278  Q
    ||||||||||||||||| ||||| | ||| ||||| ||||| ||| || | |||| ||||||    
T  30120268 agattttctcattgagaactaataagtggaaacaagttgaggttggttttcatttaccttat 30120207  T

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Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 108 - 364
Target Start/End: Complemental strand, 30131380 - 30131121
Alignment:
Q  108 tttttgtatggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttga 207  Q
    |||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||| ||||| || ||| |||||||||| |||||||||       
T  30131380 tttttgtatggcttggcatatgaaccatcaactgatgattacttggtagttttagggtcctatgaatgcgatgatggctatgatcggatatctagttcac 30131281  T
Q  208 ttaccttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaagac-ctgaaggtgctc 306  Q
    ||  ||||| |||||||||||||||||||| |   ||  |||||||| || ||| |||| |||||||||||  || || | |   || |||||  || ||    
T  30131280 ttgacttggggattttctcattgagagctattagctgaaaacaaattcaggttgcttctcatttgccttatgagagta-ttacccactctgaaaatggtc 30131182  T
Q  307 ---ccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagac 364  Q
       |||||||||||| ||||||||||||  |||||||||||||||||||||||||||||||    
T  30131181 tcaccagagtcgggttgttcttgaatggggctattcattggctggtttataattatgagac 30131121  T

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Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 30165608 - 30165734
Alignment:
Q  258 tttgattctgatttgccttattggaatactgaaagacctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataatt 357  Q
    ||||||||| ||||||||||| ||||  ||| | |  ||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||||    
T  30165608 tttgattctcatttgccttataggaaccctgcatgctctgaaggtggtcccagagttgggtcgttcttcaatggttctattcattggctggtttataatt 30165707  T
Q  358 atgagactgaaatagatgttattattg 384  Q
    || |||||||||| |||||||||||||    
T  30165708 atcagactgaaatggatgttattattg 30165734  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 364
Target Start/End: Complemental strand, 30125319 - 30125167
Alignment:
Q  212 cttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaagacctgaaggtgctcccaga 311  Q
    ||||||||||||| |||||||||||||| | |||||  ||||||||||||||||| ||||||||||| |||||||||   |  || | ||    ||||||    
T  30125319 cttggagattttcccattgagagctaataagtgggaggaaattgagtttgattctcatttgccttataggaatactgctcgctctaacggatggcccaga 30125220  T
Q  312 gtcgggtcgttcttgaatggttctattcattggctggtttataattatgagac 364  Q
    || |||| ||||||||||||  ||||||||||||||||| ||||| |||||||    
T  30125219 gttgggttgttcttgaatgggactattcattggctggttcataatcatgagac 30125167  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 132 - 239
Target Start/End: Complemental strand, 28180624 - 28180514
Alignment:
Q  132 ccgtcaactgatgattacttggtagttttagggtcctataaatgc---tataatgactatgatcgggtatctagtttgattaccttggagattttctcat 228  Q
    |||||||||||||||||||||||||||||||||||||||||||||    || ||| || ||||| |||||||||||  |||   || |||||||||||||    
T  28180624 ccgtcaactgatgattacttggtagttttagggtcctataaatgcggtgatgatggctttgatccggtatctagttcaattgaattagagattttctcat 28180525  T
Q  229 tgagagctaat 239  Q
    |||||||||||    
T  28180524 tgagagctaat 28180514  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 176
Target Start/End: Complemental strand, 30124109 - 30123949
Alignment:
Q  17 gaatccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtat 116  Q
    ||||||||||||||||||| || | ||||||||||||||  |||| ||||||| | || | | ||||| || |||||   ||||| |   ||||||||||    
T  30124109 gaatccatccaccggagtctaccagcaaatacctaggtcttctataactattgtattcgatcataataatcccaatcataatattctcgtgtttttgtat 30124010  T
Q  117 ggctttgcatacgaacc-gtcaactgatgattacttggtagttttagggtcctataaatgc 176  Q
    | |||||| |||||||| || |||  ||||||||||||||||||| |||||||| ||||||    
T  30124009 gcctttgcttacgaacccgttaacatatgattacttggtagttttggggtcctacaaatgc 30123949  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 332 - 384
Target Start/End: Complemental strand, 28181080 - 28181028
Alignment:
Q  332 ttctattcattggctggtttataattatgagactgaaatagatgttattattg 384  Q
    |||||||||||||||||||||||||||||||||  |||| | |||||||||||    
T  28181080 ttctattcattggctggtttataattatgagaccaaaattggtgttattattg 28181028  T

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Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 194 - 384
Target Start/End: Complemental strand, 43165061 - 43164871
Alignment:
Q  194 ggtatctagtttgattaccttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaaga 293  Q
    ||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43165061 ggtatctagttcgattgacttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaaga 43164962  T
Q  294 cctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattg 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43164961 cctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattg 43164871  T

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Target: chr8; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 194 - 384
Target Start/End: Complemental strand, 41311383 - 41311193
Alignment:
Q  194 ggtatctagtttgattaccttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaaga 293  Q
    |||||||||||  |||  ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||  |||||||| |||     
T  41311383 ggtatctagttcaattgacttggagattttctcattgagaggtaatcaatgggaacaaattgagtttgattctgatttgccttataagaatactgcaagc 41311284  T
Q  294 cctgaaggtgctcccagagtcgggtcgttcttgaatggttctattcattggctggtttataattatgagactgaaatagatgttattattg 384  Q
     || | |||| ||||||||| ||||||||||||||||||||||||||||||||||||||| || || |||||||||| |||||||||||||    
T  41311283 tctaatggtggtcccagagttgggtcgttcttgaatggttctattcattggctggtttatgatgataagactgaaatggatgttattattg 41311193  T

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Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 29261168 - 29261390
Alignment:
Q  17 gaatccatccaccggagtccacaaacaaatacctaggtcacctatgactattggaatcaagcttaatattctcaatcgcgatattttaaggtttttgtat 116  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| |||    
T  29261168 gaatccatcaaccggagtccacaaacaaatacctagatcacctatgactattggaatcaagcttaatattctcaatcacaatattttaaggtttttctat 29261267  T
Q  117 ggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttgg 216  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  29261268 ggctttgcatatgaaccgtcaactgatgattacttcgtagttttaaggtcctataaatgctataatgactatgatcgggtatctagattgattcccttgg 29261367  T
Q  217 agattttctcattgagagctaat 239  Q
    | |||||||||||||||||||||    
T  29261368 atattttctcattgagagctaat 29261390  T

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Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 137 - 278
Target Start/End: Original strand, 21430104 - 21430244
Alignment:
Q  137 aactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttggagattttctcattgagagct 236  Q
    |||||||||||||||||||||||| | ||||||  ||| | ||||| ||| |||   |||||||||||  |||  ||| |||||||||||||||||||||    
T  21430104 aactgatgattacttggtagttttcgagtcctacgaattcaataatcactctgagtcggtatctagttcaattgacttagagattttctcattgagagct 21430203  T
Q  237 aatgaatgggaacaaattgagtttgattctgatttgccttat 278  Q
    ||| ||| |||| |||||||| ||| |||| |||||||||||    
T  21430204 aatcaat-ggaaaaaattgaggttgcttctcatttgccttat 21430244  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 112 - 364
Target Start/End: Original strand, 21426387 - 21426635
Alignment:
Q  112 tgtatggctttgcatacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattac 211  Q
    |||||| ||| ||||||||||||||||    |||||||||||||||||| |||||||| |||    || || |||  || |  ||| ||||||  |||      
T  21426387 tgtatgccttggcatacgaaccgtcaa----tgattacttggtagttttggggtcctacaaagttgatgatcacttggagcctgtacctagttcaattga 21426482  T
Q  212 cttggagattttctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgccttattggaatactgaaagacctgaaggtgctcccaga 311  Q
    |||| |||||||||||||||||||| || ||||| ||||||||||| ||| |||| |||||||||||   | ||||||      ||||  |   ||||||    
T  21426483 cttgaagattttctcattgagagctcataaatggaaacaaattgaggttgcttctcatttgccttatatcattactgatgtctatgaatttcggcccaga 21426582  T
Q  312 gtcgggtcgttcttgaatggttctattcattggctggtttataattatgagac 364  Q
    |||||||||||||| |||||  ||||||||||||||||| |||||| ||||||    
T  21426583 gtcgggtcgttcttaaatggggctattcattggctggttcataattctgagac 21426635  T

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Target: scaffold1051 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 124 - 277
Target Start/End: Complemental strand, 2121 - 1971
Alignment:
Q  124 catacgaaccgtcaactgatgattacttggtagttttagggtcctataaatgctataatgactatgatcgggtatctagtttgattaccttggagatttt 223  Q
    |||| |||||||||||||||||||||||||||||||| |||| |||  ||| | || || ||| |     || |||| |||| | |  ||||||||||||    
T  2121 catatgaaccgtcaactgatgattacttggtagttttggggtactaccaatacgatgataacttttt---ggaatctggtttaactgacttggagatttt 2025  T
Q  224 ctcattgagagctaatgaatgggaacaaattgagtttgattctgatttgcctta 277  Q
    |||||||||||||||| | ||| ||||||||||||||| ||||  |||||||||    
T  2024 ctcattgagagctaataagtggaaacaaattgagtttggttctcctttgcctta 1971  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 48852581 - 48852614
Alignment:
Q  17 gaatccatccaccggagtccacaaacaaatacct 50  Q
    |||||||||||||||||| |||||||||||||||    
T  48852581 gaatccatccaccggagttcacaaacaaatacct 48852614  T

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